miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22648 3' -54 NC_005091.1 + 2076 0.66 0.803027
Target:  5'- cAGCAUgGCCGcgacAGCGUcgauguGCGUGUACa -3'
miRNA:   3'- cUCGUAaCGGC----UCGCGu-----UGCGCAUGg -5'
22648 3' -54 NC_005091.1 + 3662 0.68 0.688216
Target:  5'- cGAGCAgcaguUUGCCGuugaccaucuuGCGCAGguuCGCGU-CCg -3'
miRNA:   3'- -CUCGU-----AACGGCu----------CGCGUU---GCGCAuGG- -5'
22648 3' -54 NC_005091.1 + 5627 0.67 0.72084
Target:  5'- cGGUAUUGaCGAGCGuCAGgGCcUGCCu -3'
miRNA:   3'- cUCGUAACgGCUCGC-GUUgCGcAUGG- -5'
22648 3' -54 NC_005091.1 + 5657 0.67 0.69916
Target:  5'- cAGCAU-GCuCGucCGCAACGUGaUACCg -3'
miRNA:   3'- cUCGUAaCG-GCucGCGUUGCGC-AUGG- -5'
22648 3' -54 NC_005091.1 + 7216 0.69 0.621783
Target:  5'- gGGGCGUccucgGCCG-GCagaugGCGGCGCGUuACCu -3'
miRNA:   3'- -CUCGUAa----CGGCuCG-----CGUUGCGCA-UGG- -5'
22648 3' -54 NC_005091.1 + 9093 0.7 0.534013
Target:  5'- cGGCGUcgUGCUGaAGCGCAACcccgaUGUGCCg -3'
miRNA:   3'- cUCGUA--ACGGC-UCGCGUUGc----GCAUGG- -5'
22648 3' -54 NC_005091.1 + 10145 0.69 0.618451
Target:  5'- cGGCAcgcGCCGAGCGCcGcacguuccugauguGCGCGUGuCCu -3'
miRNA:   3'- cUCGUaa-CGGCUCGCG-U--------------UGCGCAU-GG- -5'
22648 3' -54 NC_005091.1 + 10901 0.8 0.138846
Target:  5'- cGGGuCGUcgcUGCCGAGUGCAAUGCGcGCCu -3'
miRNA:   3'- -CUC-GUA---ACGGCUCGCGUUGCGCaUGG- -5'
22648 3' -54 NC_005091.1 + 11480 0.77 0.226974
Target:  5'- gGGGCAg-GCCGaAGCGCAGCGUGacgcgGCCg -3'
miRNA:   3'- -CUCGUaaCGGC-UCGCGUUGCGCa----UGG- -5'
22648 3' -54 NC_005091.1 + 12373 0.68 0.666173
Target:  5'- cGAGCGcgGCC-AGUGCGACgGCGgcgACUa -3'
miRNA:   3'- -CUCGUaaCGGcUCGCGUUG-CGCa--UGG- -5'
22648 3' -54 NC_005091.1 + 14233 0.69 0.621783
Target:  5'- cGGGCAcgGUCGAGcCGCcuuGCGUGUcguacGCCg -3'
miRNA:   3'- -CUCGUaaCGGCUC-GCGu--UGCGCA-----UGG- -5'
22648 3' -54 NC_005091.1 + 16285 0.7 0.544797
Target:  5'- cGGGCGcgacGgCGGGCGCGACGaaGUACCu -3'
miRNA:   3'- -CUCGUaa--CgGCUCGCGUUGCg-CAUGG- -5'
22648 3' -54 NC_005091.1 + 17936 0.66 0.763027
Target:  5'- cGGUAgacgGCCG-GCGCGACggGUGUGCg -3'
miRNA:   3'- cUCGUaa--CGGCuCGCGUUG--CGCAUGg -5'
22648 3' -54 NC_005091.1 + 19401 0.66 0.803027
Target:  5'- cGGCAUgUG-CGAGCGCGGCGCu---- -3'
miRNA:   3'- cUCGUA-ACgGCUCGCGUUGCGcaugg -5'
22648 3' -54 NC_005091.1 + 19783 0.7 0.55565
Target:  5'- -cGCAgcGCCcauGAGCGUGAUGCGauUGCCg -3'
miRNA:   3'- cuCGUaaCGG---CUCGCGUUGCGC--AUGG- -5'
22648 3' -54 NC_005091.1 + 20241 0.68 0.665067
Target:  5'- -cGCGcaGUCGAGCGUgaucgaaucggccGACGCGUcGCCg -3'
miRNA:   3'- cuCGUaaCGGCUCGCG-------------UUGCGCA-UGG- -5'
22648 3' -54 NC_005091.1 + 20286 0.68 0.684921
Target:  5'- cGAGUAgccGCCGuGCGCGAUGUucgucgcaacguacGUACUg -3'
miRNA:   3'- -CUCGUaa-CGGCuCGCGUUGCG--------------CAUGG- -5'
22648 3' -54 NC_005091.1 + 21266 0.66 0.783346
Target:  5'- cGAGCGc-GUCGAGCGUucaAGCGCagacgACCa -3'
miRNA:   3'- -CUCGUaaCGGCUCGCG---UUGCGca---UGG- -5'
22648 3' -54 NC_005091.1 + 21396 0.66 0.773261
Target:  5'- --aCGUUGCgucaucaagCGaAGCGUAguACGCGUACCg -3'
miRNA:   3'- cucGUAACG---------GC-UCGCGU--UGCGCAUGG- -5'
22648 3' -54 NC_005091.1 + 22748 0.67 0.74216
Target:  5'- -cGCcg-GCCGucAGCGCGgcguucagGCGCGUGCg -3'
miRNA:   3'- cuCGuaaCGGC--UCGCGU--------UGCGCAUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.