Results 1 - 20 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22648 | 3' | -54 | NC_005091.1 | + | 52118 | 0.73 | 0.393656 |
Target: 5'- cGGCcgUcGCCG-GCGCGggGCGCGUugCg -3' miRNA: 3'- cUCGuaA-CGGCuCGCGU--UGCGCAugG- -5' |
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22648 | 3' | -54 | NC_005091.1 | + | 54269 | 0.67 | 0.708955 |
Target: 5'- -cGCGUUGCCGAucGCGCGGucuuccugauggcCGCaGUaGCCg -3' miRNA: 3'- cuCGUAACGGCU--CGCGUU-------------GCG-CA-UGG- -5' |
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22648 | 3' | -54 | NC_005091.1 | + | 5657 | 0.67 | 0.69916 |
Target: 5'- cAGCAU-GCuCGucCGCAACGUGaUACCg -3' miRNA: 3'- cUCGUAaCG-GCucGCGUUGCGC-AUGG- -5' |
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22648 | 3' | -54 | NC_005091.1 | + | 49464 | 0.68 | 0.688216 |
Target: 5'- -cGUAgcGCaCGAGCGCGACGagcagGCCa -3' miRNA: 3'- cuCGUaaCG-GCUCGCGUUGCgca--UGG- -5' |
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22648 | 3' | -54 | NC_005091.1 | + | 20286 | 0.68 | 0.684921 |
Target: 5'- cGAGUAgccGCCGuGCGCGAUGUucgucgcaacguacGUACUg -3' miRNA: 3'- -CUCGUaa-CGGCuCGCGUUGCG--------------CAUGG- -5' |
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22648 | 3' | -54 | NC_005091.1 | + | 51952 | 0.68 | 0.673907 |
Target: 5'- cGAGUA--GCCGAGUGCGcuacggccuucgauAUGCGU-CCg -3' miRNA: 3'- -CUCGUaaCGGCUCGCGU--------------UGCGCAuGG- -5' |
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22648 | 3' | -54 | NC_005091.1 | + | 53575 | 0.68 | 0.666173 |
Target: 5'- --cCAUUGCC-AGCGCAACcccgGCGcGCCg -3' miRNA: 3'- cucGUAACGGcUCGCGUUG----CGCaUGG- -5' |
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22648 | 3' | -54 | NC_005091.1 | + | 12373 | 0.68 | 0.666173 |
Target: 5'- cGAGCGcgGCC-AGUGCGACgGCGgcgACUa -3' miRNA: 3'- -CUCGUaaCGGcUCGCGUUG-CGCa--UGG- -5' |
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22648 | 3' | -54 | NC_005091.1 | + | 20241 | 0.68 | 0.665067 |
Target: 5'- -cGCGcaGUCGAGCGUgaucgaaucggccGACGCGUcGCCg -3' miRNA: 3'- cuCGUaaCGGCUCGCG-------------UUGCGCA-UGG- -5' |
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22648 | 3' | -54 | NC_005091.1 | + | 26036 | 0.68 | 0.65953 |
Target: 5'- -cGCcgUGgCGAGCGCGaucagcucgccgcgcACGCGcugaUACCa -3' miRNA: 3'- cuCGuaACgGCUCGCGU---------------UGCGC----AUGG- -5' |
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22648 | 3' | -54 | NC_005091.1 | + | 54320 | 0.68 | 0.655097 |
Target: 5'- -cGCAUgGUCGAGCGCuuCGCGcaugucguCCg -3' miRNA: 3'- cuCGUAaCGGCUCGCGuuGCGCau------GG- -5' |
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22648 | 3' | -54 | NC_005091.1 | + | 23225 | 0.69 | 0.631781 |
Target: 5'- --aCcgUGCCGcugugguAGCGCGGCGCGUucgcaaACCa -3' miRNA: 3'- cucGuaACGGC-------UCGCGUUGCGCA------UGG- -5' |
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22648 | 3' | -54 | NC_005091.1 | + | 14233 | 0.69 | 0.621783 |
Target: 5'- cGGGCAcgGUCGAGcCGCcuuGCGUGUcguacGCCg -3' miRNA: 3'- -CUCGUaaCGGCUC-GCGu--UGCGCA-----UGG- -5' |
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22648 | 3' | -54 | NC_005091.1 | + | 10145 | 0.69 | 0.618451 |
Target: 5'- cGGCAcgcGCCGAGCGCcGcacguuccugauguGCGCGUGuCCu -3' miRNA: 3'- cUCGUaa-CGGCUCGCG-U--------------UGCGCAU-GG- -5' |
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22648 | 3' | -54 | NC_005091.1 | + | 48972 | 0.69 | 0.617341 |
Target: 5'- gGGGC-UUGgCGGGCGCGcuaaaugucccguUGCGUACCu -3' miRNA: 3'- -CUCGuAACgGCUCGCGUu------------GCGCAUGG- -5' |
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22648 | 3' | -54 | NC_005091.1 | + | 23384 | 0.69 | 0.610683 |
Target: 5'- gGGGCA--GCCGA-CGCAGCGCc-GCCg -3' miRNA: 3'- -CUCGUaaCGGCUcGCGUUGCGcaUGG- -5' |
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22648 | 3' | -54 | NC_005091.1 | + | 19783 | 0.7 | 0.55565 |
Target: 5'- -cGCAgcGCCcauGAGCGUGAUGCGauUGCCg -3' miRNA: 3'- cuCGUaaCGG---CUCGCGUUGCGC--AUGG- -5' |
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22648 | 3' | -54 | NC_005091.1 | + | 9093 | 0.7 | 0.534013 |
Target: 5'- cGGCGUcgUGCUGaAGCGCAACcccgaUGUGCCg -3' miRNA: 3'- cUCGUA--ACGGC-UCGCGUUGc----GCAUGG- -5' |
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22648 | 3' | -54 | NC_005091.1 | + | 31786 | 0.71 | 0.481375 |
Target: 5'- cGAGCAggccGCCGAcgaGCGCGACGacacgGUACUu -3' miRNA: 3'- -CUCGUaa--CGGCU---CGCGUUGCg----CAUGG- -5' |
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22648 | 3' | -54 | NC_005091.1 | + | 36303 | 0.76 | 0.25211 |
Target: 5'- -cGCAaUGCgCGAGCGUcGCGgCGUGCCg -3' miRNA: 3'- cuCGUaACG-GCUCGCGuUGC-GCAUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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