Results 1 - 20 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22648 | 3' | -54 | NC_005091.1 | + | 2076 | 0.66 | 0.803027 |
Target: 5'- cAGCAUgGCCGcgacAGCGUcgauguGCGUGUACa -3' miRNA: 3'- cUCGUAaCGGC----UCGCGu-----UGCGCAUGg -5' |
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22648 | 3' | -54 | NC_005091.1 | + | 3662 | 0.68 | 0.688216 |
Target: 5'- cGAGCAgcaguUUGCCGuugaccaucuuGCGCAGguuCGCGU-CCg -3' miRNA: 3'- -CUCGU-----AACGGCu----------CGCGUU---GCGCAuGG- -5' |
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22648 | 3' | -54 | NC_005091.1 | + | 5627 | 0.67 | 0.72084 |
Target: 5'- cGGUAUUGaCGAGCGuCAGgGCcUGCCu -3' miRNA: 3'- cUCGUAACgGCUCGC-GUUgCGcAUGG- -5' |
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22648 | 3' | -54 | NC_005091.1 | + | 5657 | 0.67 | 0.69916 |
Target: 5'- cAGCAU-GCuCGucCGCAACGUGaUACCg -3' miRNA: 3'- cUCGUAaCG-GCucGCGUUGCGC-AUGG- -5' |
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22648 | 3' | -54 | NC_005091.1 | + | 7216 | 0.69 | 0.621783 |
Target: 5'- gGGGCGUccucgGCCG-GCagaugGCGGCGCGUuACCu -3' miRNA: 3'- -CUCGUAa----CGGCuCG-----CGUUGCGCA-UGG- -5' |
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22648 | 3' | -54 | NC_005091.1 | + | 9093 | 0.7 | 0.534013 |
Target: 5'- cGGCGUcgUGCUGaAGCGCAACcccgaUGUGCCg -3' miRNA: 3'- cUCGUA--ACGGC-UCGCGUUGc----GCAUGG- -5' |
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22648 | 3' | -54 | NC_005091.1 | + | 10145 | 0.69 | 0.618451 |
Target: 5'- cGGCAcgcGCCGAGCGCcGcacguuccugauguGCGCGUGuCCu -3' miRNA: 3'- cUCGUaa-CGGCUCGCG-U--------------UGCGCAU-GG- -5' |
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22648 | 3' | -54 | NC_005091.1 | + | 10901 | 0.8 | 0.138846 |
Target: 5'- cGGGuCGUcgcUGCCGAGUGCAAUGCGcGCCu -3' miRNA: 3'- -CUC-GUA---ACGGCUCGCGUUGCGCaUGG- -5' |
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22648 | 3' | -54 | NC_005091.1 | + | 11480 | 0.77 | 0.226974 |
Target: 5'- gGGGCAg-GCCGaAGCGCAGCGUGacgcgGCCg -3' miRNA: 3'- -CUCGUaaCGGC-UCGCGUUGCGCa----UGG- -5' |
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22648 | 3' | -54 | NC_005091.1 | + | 12373 | 0.68 | 0.666173 |
Target: 5'- cGAGCGcgGCC-AGUGCGACgGCGgcgACUa -3' miRNA: 3'- -CUCGUaaCGGcUCGCGUUG-CGCa--UGG- -5' |
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22648 | 3' | -54 | NC_005091.1 | + | 14233 | 0.69 | 0.621783 |
Target: 5'- cGGGCAcgGUCGAGcCGCcuuGCGUGUcguacGCCg -3' miRNA: 3'- -CUCGUaaCGGCUC-GCGu--UGCGCA-----UGG- -5' |
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22648 | 3' | -54 | NC_005091.1 | + | 16285 | 0.7 | 0.544797 |
Target: 5'- cGGGCGcgacGgCGGGCGCGACGaaGUACCu -3' miRNA: 3'- -CUCGUaa--CgGCUCGCGUUGCg-CAUGG- -5' |
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22648 | 3' | -54 | NC_005091.1 | + | 17936 | 0.66 | 0.763027 |
Target: 5'- cGGUAgacgGCCG-GCGCGACggGUGUGCg -3' miRNA: 3'- cUCGUaa--CGGCuCGCGUUG--CGCAUGg -5' |
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22648 | 3' | -54 | NC_005091.1 | + | 19401 | 0.66 | 0.803027 |
Target: 5'- cGGCAUgUG-CGAGCGCGGCGCu---- -3' miRNA: 3'- cUCGUA-ACgGCUCGCGUUGCGcaugg -5' |
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22648 | 3' | -54 | NC_005091.1 | + | 19783 | 0.7 | 0.55565 |
Target: 5'- -cGCAgcGCCcauGAGCGUGAUGCGauUGCCg -3' miRNA: 3'- cuCGUaaCGG---CUCGCGUUGCGC--AUGG- -5' |
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22648 | 3' | -54 | NC_005091.1 | + | 20241 | 0.68 | 0.665067 |
Target: 5'- -cGCGcaGUCGAGCGUgaucgaaucggccGACGCGUcGCCg -3' miRNA: 3'- cuCGUaaCGGCUCGCG-------------UUGCGCA-UGG- -5' |
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22648 | 3' | -54 | NC_005091.1 | + | 20286 | 0.68 | 0.684921 |
Target: 5'- cGAGUAgccGCCGuGCGCGAUGUucgucgcaacguacGUACUg -3' miRNA: 3'- -CUCGUaa-CGGCuCGCGUUGCG--------------CAUGG- -5' |
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22648 | 3' | -54 | NC_005091.1 | + | 21266 | 0.66 | 0.783346 |
Target: 5'- cGAGCGc-GUCGAGCGUucaAGCGCagacgACCa -3' miRNA: 3'- -CUCGUaaCGGCUCGCG---UUGCGca---UGG- -5' |
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22648 | 3' | -54 | NC_005091.1 | + | 21396 | 0.66 | 0.773261 |
Target: 5'- --aCGUUGCgucaucaagCGaAGCGUAguACGCGUACCg -3' miRNA: 3'- cucGUAACG---------GC-UCGCGU--UGCGCAUGG- -5' |
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22648 | 3' | -54 | NC_005091.1 | + | 22748 | 0.67 | 0.74216 |
Target: 5'- -cGCcg-GCCGucAGCGCGgcguucagGCGCGUGCg -3' miRNA: 3'- cuCGuaaCGGC--UCGCGU--------UGCGCAUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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