miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22648 3' -54 NC_005091.1 + 53753 1.11 0.000935
Target:  5'- cGAGCAUUGCCGAGCGCAACGCGUACCc -3'
miRNA:   3'- -CUCGUAACGGCUCGCGUUGCGCAUGG- -5'
22648 3' -54 NC_005091.1 + 45796 0.83 0.093297
Target:  5'- aGAGCAguaGCCG-GCGCGGCGCGcgGCCg -3'
miRNA:   3'- -CUCGUaa-CGGCuCGCGUUGCGCa-UGG- -5'
22648 3' -54 NC_005091.1 + 50073 0.8 0.133876
Target:  5'- cGGCcugUGUgauagccgacgaauCGAGCGCAACGCGUGCCg -3'
miRNA:   3'- cUCGua-ACG--------------GCUCGCGUUGCGCAUGG- -5'
22648 3' -54 NC_005091.1 + 10901 0.8 0.138846
Target:  5'- cGGGuCGUcgcUGCCGAGUGCAAUGCGcGCCu -3'
miRNA:   3'- -CUC-GUA---ACGGCUCGCGUUGCGCaUGG- -5'
22648 3' -54 NC_005091.1 + 45333 0.78 0.188106
Target:  5'- aGAGUu---CCGGGCGCAACGCGcgGCCg -3'
miRNA:   3'- -CUCGuaacGGCUCGCGUUGCGCa-UGG- -5'
22648 3' -54 NC_005091.1 + 11480 0.77 0.226974
Target:  5'- gGGGCAg-GCCGaAGCGCAGCGUGacgcgGCCg -3'
miRNA:   3'- -CUCGUaaCGGC-UCGCGUUGCGCa----UGG- -5'
22648 3' -54 NC_005091.1 + 36303 0.76 0.25211
Target:  5'- -cGCAaUGCgCGAGCGUcGCGgCGUGCCg -3'
miRNA:   3'- cuCGUaACG-GCUCGCGuUGC-GCAUGG- -5'
22648 3' -54 NC_005091.1 + 48904 0.73 0.375612
Target:  5'- -cGCAUgucaucgGCCGuacGGCGCAGCGCGUcUCa -3'
miRNA:   3'- cuCGUAa------CGGC---UCGCGUUGCGCAuGG- -5'
22648 3' -54 NC_005091.1 + 52118 0.73 0.393656
Target:  5'- cGGCcgUcGCCG-GCGCGggGCGCGUugCg -3'
miRNA:   3'- cUCGuaA-CGGCuCGCGU--UGCGCAugG- -5'
22648 3' -54 NC_005091.1 + 35246 0.72 0.416037
Target:  5'- -uGCAaccUGCCGgcaguaccucgcggcGGCGCcgcGACGCGUACCa -3'
miRNA:   3'- cuCGUa--ACGGC---------------UCGCG---UUGCGCAUGG- -5'
22648 3' -54 NC_005091.1 + 25876 0.71 0.481375
Target:  5'- aGGCA--GCCG-GCGCAACGaCGaACCa -3'
miRNA:   3'- cUCGUaaCGGCuCGCGUUGC-GCaUGG- -5'
22648 3' -54 NC_005091.1 + 31786 0.71 0.481375
Target:  5'- cGAGCAggccGCCGAcgaGCGCGACGacacgGUACUu -3'
miRNA:   3'- -CUCGUaa--CGGCU---CGCGUUGCg----CAUGG- -5'
22648 3' -54 NC_005091.1 + 40747 0.71 0.491711
Target:  5'- -cGUGUuccgUGaaGGGCGCuGCGCGUACCg -3'
miRNA:   3'- cuCGUA----ACggCUCGCGuUGCGCAUGG- -5'
22648 3' -54 NC_005091.1 + 9093 0.7 0.534013
Target:  5'- cGGCGUcgUGCUGaAGCGCAACcccgaUGUGCCg -3'
miRNA:   3'- cUCGUA--ACGGC-UCGCGUUGc----GCAUGG- -5'
22648 3' -54 NC_005091.1 + 16285 0.7 0.544797
Target:  5'- cGGGCGcgacGgCGGGCGCGACGaaGUACCu -3'
miRNA:   3'- -CUCGUaa--CgGCUCGCGUUGCg-CAUGG- -5'
22648 3' -54 NC_005091.1 + 19783 0.7 0.55565
Target:  5'- -cGCAgcGCCcauGAGCGUGAUGCGauUGCCg -3'
miRNA:   3'- cuCGUaaCGG---CUCGCGUUGCGC--AUGG- -5'
22648 3' -54 NC_005091.1 + 26788 0.69 0.588549
Target:  5'- aAGCGguccGUCGAGgGCGcggccauCGCGUACCa -3'
miRNA:   3'- cUCGUaa--CGGCUCgCGUu------GCGCAUGG- -5'
22648 3' -54 NC_005091.1 + 38229 0.69 0.599602
Target:  5'- cGGCAggGCC-AGCGCcauguaguGCGCGUccACCa -3'
miRNA:   3'- cUCGUaaCGGcUCGCGu-------UGCGCA--UGG- -5'
22648 3' -54 NC_005091.1 + 23384 0.69 0.610683
Target:  5'- gGGGCA--GCCGA-CGCAGCGCc-GCCg -3'
miRNA:   3'- -CUCGUaaCGGCUcGCGUUGCGcaUGG- -5'
22648 3' -54 NC_005091.1 + 48972 0.69 0.617341
Target:  5'- gGGGC-UUGgCGGGCGCGcuaaaugucccguUGCGUACCu -3'
miRNA:   3'- -CUCGuAACgGCUCGCGUu------------GCGCAUGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.