Results 1 - 20 of 69 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22648 | 3' | -54 | NC_005091.1 | + | 53753 | 1.11 | 0.000935 |
Target: 5'- cGAGCAUUGCCGAGCGCAACGCGUACCc -3' miRNA: 3'- -CUCGUAACGGCUCGCGUUGCGCAUGG- -5' |
|||||||
22648 | 3' | -54 | NC_005091.1 | + | 45796 | 0.83 | 0.093297 |
Target: 5'- aGAGCAguaGCCG-GCGCGGCGCGcgGCCg -3' miRNA: 3'- -CUCGUaa-CGGCuCGCGUUGCGCa-UGG- -5' |
|||||||
22648 | 3' | -54 | NC_005091.1 | + | 50073 | 0.8 | 0.133876 |
Target: 5'- cGGCcugUGUgauagccgacgaauCGAGCGCAACGCGUGCCg -3' miRNA: 3'- cUCGua-ACG--------------GCUCGCGUUGCGCAUGG- -5' |
|||||||
22648 | 3' | -54 | NC_005091.1 | + | 10901 | 0.8 | 0.138846 |
Target: 5'- cGGGuCGUcgcUGCCGAGUGCAAUGCGcGCCu -3' miRNA: 3'- -CUC-GUA---ACGGCUCGCGUUGCGCaUGG- -5' |
|||||||
22648 | 3' | -54 | NC_005091.1 | + | 45333 | 0.78 | 0.188106 |
Target: 5'- aGAGUu---CCGGGCGCAACGCGcgGCCg -3' miRNA: 3'- -CUCGuaacGGCUCGCGUUGCGCa-UGG- -5' |
|||||||
22648 | 3' | -54 | NC_005091.1 | + | 11480 | 0.77 | 0.226974 |
Target: 5'- gGGGCAg-GCCGaAGCGCAGCGUGacgcgGCCg -3' miRNA: 3'- -CUCGUaaCGGC-UCGCGUUGCGCa----UGG- -5' |
|||||||
22648 | 3' | -54 | NC_005091.1 | + | 36303 | 0.76 | 0.25211 |
Target: 5'- -cGCAaUGCgCGAGCGUcGCGgCGUGCCg -3' miRNA: 3'- cuCGUaACG-GCUCGCGuUGC-GCAUGG- -5' |
|||||||
22648 | 3' | -54 | NC_005091.1 | + | 48904 | 0.73 | 0.375612 |
Target: 5'- -cGCAUgucaucgGCCGuacGGCGCAGCGCGUcUCa -3' miRNA: 3'- cuCGUAa------CGGC---UCGCGUUGCGCAuGG- -5' |
|||||||
22648 | 3' | -54 | NC_005091.1 | + | 52118 | 0.73 | 0.393656 |
Target: 5'- cGGCcgUcGCCG-GCGCGggGCGCGUugCg -3' miRNA: 3'- cUCGuaA-CGGCuCGCGU--UGCGCAugG- -5' |
|||||||
22648 | 3' | -54 | NC_005091.1 | + | 35246 | 0.72 | 0.416037 |
Target: 5'- -uGCAaccUGCCGgcaguaccucgcggcGGCGCcgcGACGCGUACCa -3' miRNA: 3'- cuCGUa--ACGGC---------------UCGCG---UUGCGCAUGG- -5' |
|||||||
22648 | 3' | -54 | NC_005091.1 | + | 25876 | 0.71 | 0.481375 |
Target: 5'- aGGCA--GCCG-GCGCAACGaCGaACCa -3' miRNA: 3'- cUCGUaaCGGCuCGCGUUGC-GCaUGG- -5' |
|||||||
22648 | 3' | -54 | NC_005091.1 | + | 31786 | 0.71 | 0.481375 |
Target: 5'- cGAGCAggccGCCGAcgaGCGCGACGacacgGUACUu -3' miRNA: 3'- -CUCGUaa--CGGCU---CGCGUUGCg----CAUGG- -5' |
|||||||
22648 | 3' | -54 | NC_005091.1 | + | 40747 | 0.71 | 0.491711 |
Target: 5'- -cGUGUuccgUGaaGGGCGCuGCGCGUACCg -3' miRNA: 3'- cuCGUA----ACggCUCGCGuUGCGCAUGG- -5' |
|||||||
22648 | 3' | -54 | NC_005091.1 | + | 9093 | 0.7 | 0.534013 |
Target: 5'- cGGCGUcgUGCUGaAGCGCAACcccgaUGUGCCg -3' miRNA: 3'- cUCGUA--ACGGC-UCGCGUUGc----GCAUGG- -5' |
|||||||
22648 | 3' | -54 | NC_005091.1 | + | 16285 | 0.7 | 0.544797 |
Target: 5'- cGGGCGcgacGgCGGGCGCGACGaaGUACCu -3' miRNA: 3'- -CUCGUaa--CgGCUCGCGUUGCg-CAUGG- -5' |
|||||||
22648 | 3' | -54 | NC_005091.1 | + | 19783 | 0.7 | 0.55565 |
Target: 5'- -cGCAgcGCCcauGAGCGUGAUGCGauUGCCg -3' miRNA: 3'- cuCGUaaCGG---CUCGCGUUGCGC--AUGG- -5' |
|||||||
22648 | 3' | -54 | NC_005091.1 | + | 26788 | 0.69 | 0.588549 |
Target: 5'- aAGCGguccGUCGAGgGCGcggccauCGCGUACCa -3' miRNA: 3'- cUCGUaa--CGGCUCgCGUu------GCGCAUGG- -5' |
|||||||
22648 | 3' | -54 | NC_005091.1 | + | 38229 | 0.69 | 0.599602 |
Target: 5'- cGGCAggGCC-AGCGCcauguaguGCGCGUccACCa -3' miRNA: 3'- cUCGUaaCGGcUCGCGu-------UGCGCA--UGG- -5' |
|||||||
22648 | 3' | -54 | NC_005091.1 | + | 23384 | 0.69 | 0.610683 |
Target: 5'- gGGGCA--GCCGA-CGCAGCGCc-GCCg -3' miRNA: 3'- -CUCGUaaCGGCUcGCGUUGCGcaUGG- -5' |
|||||||
22648 | 3' | -54 | NC_005091.1 | + | 48972 | 0.69 | 0.617341 |
Target: 5'- gGGGC-UUGgCGGGCGCGcuaaaugucccguUGCGUACCu -3' miRNA: 3'- -CUCGuAACgGCUCGCGUu------------GCGCAUGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home