miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22648 3' -54 NC_005091.1 + 48715 0.67 0.719763
Target:  5'- cGGCAcUGCaCGAGCGaCAcggagauacggccAUGCGUugCg -3'
miRNA:   3'- cUCGUaACG-GCUCGC-GU-------------UGCGCAugG- -5'
22648 3' -54 NC_005091.1 + 20241 0.68 0.665067
Target:  5'- -cGCGcaGUCGAGCGUgaucgaaucggccGACGCGUcGCCg -3'
miRNA:   3'- cuCGUaaCGGCUCGCG-------------UUGCGCA-UGG- -5'
22648 3' -54 NC_005091.1 + 12373 0.68 0.666173
Target:  5'- cGAGCGcgGCC-AGUGCGACgGCGgcgACUa -3'
miRNA:   3'- -CUCGUaaCGGcUCGCGUUG-CGCa--UGG- -5'
22648 3' -54 NC_005091.1 + 53575 0.68 0.666173
Target:  5'- --cCAUUGCC-AGCGCAACcccgGCGcGCCg -3'
miRNA:   3'- cucGUAACGGcUCGCGUUG----CGCaUGG- -5'
22648 3' -54 NC_005091.1 + 51952 0.68 0.673907
Target:  5'- cGAGUA--GCCGAGUGCGcuacggccuucgauAUGCGU-CCg -3'
miRNA:   3'- -CUCGUaaCGGCUCGCGU--------------UGCGCAuGG- -5'
22648 3' -54 NC_005091.1 + 20286 0.68 0.684921
Target:  5'- cGAGUAgccGCCGuGCGCGAUGUucgucgcaacguacGUACUg -3'
miRNA:   3'- -CUCGUaa-CGGCuCGCGUUGCG--------------CAUGG- -5'
22648 3' -54 NC_005091.1 + 49464 0.68 0.688216
Target:  5'- -cGUAgcGCaCGAGCGCGACGagcagGCCa -3'
miRNA:   3'- cuCGUaaCG-GCUCGCGUUGCgca--UGG- -5'
22648 3' -54 NC_005091.1 + 5657 0.67 0.69916
Target:  5'- cAGCAU-GCuCGucCGCAACGUGaUACCg -3'
miRNA:   3'- cUCGUAaCG-GCucGCGUUGCGC-AUGG- -5'
22648 3' -54 NC_005091.1 + 54269 0.67 0.708955
Target:  5'- -cGCGUUGCCGAucGCGCGGucuuccugauggcCGCaGUaGCCg -3'
miRNA:   3'- cuCGUAACGGCU--CGCGUU-------------GCG-CA-UGG- -5'
22648 3' -54 NC_005091.1 + 26036 0.68 0.65953
Target:  5'- -cGCcgUGgCGAGCGCGaucagcucgccgcgcACGCGcugaUACCa -3'
miRNA:   3'- cuCGuaACgGCUCGCGU---------------UGCGC----AUGG- -5'
22648 3' -54 NC_005091.1 + 54320 0.68 0.655097
Target:  5'- -cGCAUgGUCGAGCGCuuCGCGcaugucguCCg -3'
miRNA:   3'- cuCGUAaCGGCUCGCGuuGCGCau------GG- -5'
22648 3' -54 NC_005091.1 + 23225 0.69 0.631781
Target:  5'- --aCcgUGCCGcugugguAGCGCGGCGCGUucgcaaACCa -3'
miRNA:   3'- cucGuaACGGC-------UCGCGUUGCGCA------UGG- -5'
22648 3' -54 NC_005091.1 + 52118 0.73 0.393656
Target:  5'- cGGCcgUcGCCG-GCGCGggGCGCGUugCg -3'
miRNA:   3'- cUCGuaA-CGGCuCGCGU--UGCGCAugG- -5'
22648 3' -54 NC_005091.1 + 31786 0.71 0.481375
Target:  5'- cGAGCAggccGCCGAcgaGCGCGACGacacgGUACUu -3'
miRNA:   3'- -CUCGUaa--CGGCU---CGCGUUGCg----CAUGG- -5'
22648 3' -54 NC_005091.1 + 9093 0.7 0.534013
Target:  5'- cGGCGUcgUGCUGaAGCGCAACcccgaUGUGCCg -3'
miRNA:   3'- cUCGUA--ACGGC-UCGCGUUGc----GCAUGG- -5'
22648 3' -54 NC_005091.1 + 19783 0.7 0.55565
Target:  5'- -cGCAgcGCCcauGAGCGUGAUGCGauUGCCg -3'
miRNA:   3'- cuCGUaaCGG---CUCGCGUUGCGC--AUGG- -5'
22648 3' -54 NC_005091.1 + 23384 0.69 0.610683
Target:  5'- gGGGCA--GCCGA-CGCAGCGCc-GCCg -3'
miRNA:   3'- -CUCGUaaCGGCUcGCGUUGCGcaUGG- -5'
22648 3' -54 NC_005091.1 + 48972 0.69 0.617341
Target:  5'- gGGGC-UUGgCGGGCGCGcuaaaugucccguUGCGUACCu -3'
miRNA:   3'- -CUCGuAACgGCUCGCGUu------------GCGCAUGG- -5'
22648 3' -54 NC_005091.1 + 10145 0.69 0.618451
Target:  5'- cGGCAcgcGCCGAGCGCcGcacguuccugauguGCGCGUGuCCu -3'
miRNA:   3'- cUCGUaa-CGGCUCGCG-U--------------UGCGCAU-GG- -5'
22648 3' -54 NC_005091.1 + 14233 0.69 0.621783
Target:  5'- cGGGCAcgGUCGAGcCGCcuuGCGUGUcguacGCCg -3'
miRNA:   3'- -CUCGUaaCGGCUC-GCGu--UGCGCA-----UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.