miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22669 5' -58.5 NC_005091.1 + 35239 0.69 0.420775
Target:  5'- uGC-CGGCAguaccucGCGGCGGCgCCGcgACGCGu -3'
miRNA:   3'- gUGaGCCGU-------CGCUGCUG-GGCa-UGCGC- -5'
22669 5' -58.5 NC_005091.1 + 31634 0.69 0.421689
Target:  5'- --aUCGGCGGCGGCGuCCCacaccaGUACgGCa -3'
miRNA:   3'- gugAGCCGUCGCUGCuGGG------CAUG-CGc -5'
22669 5' -58.5 NC_005091.1 + 27803 0.69 0.421689
Target:  5'- cCACgauccCGGuCGGCGAagaGACCC-UGCGCGu -3'
miRNA:   3'- -GUGa----GCC-GUCGCUg--CUGGGcAUGCGC- -5'
22669 5' -58.5 NC_005091.1 + 6607 0.69 0.430898
Target:  5'- uCGCUCGcGCGGCGuccgggcugccgGCGuucauGCCCGaGCGCGc -3'
miRNA:   3'- -GUGAGC-CGUCGC------------UGC-----UGGGCaUGCGC- -5'
22669 5' -58.5 NC_005091.1 + 7173 0.69 0.430898
Target:  5'- uGC-CGGCAGCGGCGGCCgucuCG-AUGCc -3'
miRNA:   3'- gUGaGCCGUCGCUGCUGG----GCaUGCGc -5'
22669 5' -58.5 NC_005091.1 + 34535 0.68 0.440223
Target:  5'- gAC-CGcGCGGCGAacCGG-CCGUACGCGa -3'
miRNA:   3'- gUGaGC-CGUCGCU--GCUgGGCAUGCGC- -5'
22669 5' -58.5 NC_005091.1 + 44190 0.68 0.440223
Target:  5'- aCGC-CGuGC-GCGACaGugCCGUAUGCGg -3'
miRNA:   3'- -GUGaGC-CGuCGCUG-CugGGCAUGCGC- -5'
22669 5' -58.5 NC_005091.1 + 16695 0.68 0.447766
Target:  5'- gGCUUGGCAgGCGGCGcagggaggcauuCCCG-ACGCa -3'
miRNA:   3'- gUGAGCCGU-CGCUGCu-----------GGGCaUGCGc -5'
22669 5' -58.5 NC_005091.1 + 15767 0.68 0.459212
Target:  5'- aGCUCGGCAacacgcauGcCGACGccCCCGguuUGCGCGg -3'
miRNA:   3'- gUGAGCCGU--------C-GCUGCu-GGGC---AUGCGC- -5'
22669 5' -58.5 NC_005091.1 + 34178 0.68 0.477648
Target:  5'- aCACgauaUCGGCAaugccgcGCGACuGAUCCGguucGCGCGg -3'
miRNA:   3'- -GUG----AGCCGU-------CGCUG-CUGGGCa---UGCGC- -5'
22669 5' -58.5 NC_005091.1 + 50835 0.68 0.478628
Target:  5'- aACUgCGGCucgauaucaAGCGuGCGGCCguCGUGCGCGc -3'
miRNA:   3'- gUGA-GCCG---------UCGC-UGCUGG--GCAUGCGC- -5'
22669 5' -58.5 NC_005091.1 + 31717 0.68 0.488487
Target:  5'- cCGCcuUCGGCuGCGcCGAaaugCCGUACGCc -3'
miRNA:   3'- -GUG--AGCCGuCGCuGCUg---GGCAUGCGc -5'
22669 5' -58.5 NC_005091.1 + 48788 0.68 0.488487
Target:  5'- uCGCUCGuGCAGUGcCGcauuggccGgCCGUGCGCa -3'
miRNA:   3'- -GUGAGC-CGUCGCuGC--------UgGGCAUGCGc -5'
22669 5' -58.5 NC_005091.1 + 55592 0.67 0.49844
Target:  5'- gCGCUCGuGCAgGCGGCGAUCgGcgaagugAUGCGg -3'
miRNA:   3'- -GUGAGC-CGU-CGCUGCUGGgCa------UGCGC- -5'
22669 5' -58.5 NC_005091.1 + 4823 0.67 0.508482
Target:  5'- gCGCUCGGC-GCGGCGGCaaCGgucaaGCGg -3'
miRNA:   3'- -GUGAGCCGuCGCUGCUGg-GCaug--CGC- -5'
22669 5' -58.5 NC_005091.1 + 4215 0.67 0.508482
Target:  5'- uGCcCGGCGGCGcgcccgucacCGugCCGUACGUc -3'
miRNA:   3'- gUGaGCCGUCGCu---------GCugGGCAUGCGc -5'
22669 5' -58.5 NC_005091.1 + 15949 0.67 0.515562
Target:  5'- cCACUUGGCGcucgcggcguccacGCGAUGACCUGcuuguCGCu -3'
miRNA:   3'- -GUGAGCCGU--------------CGCUGCUGGGCau---GCGc -5'
22669 5' -58.5 NC_005091.1 + 30005 0.67 0.52779
Target:  5'- aGCgagCGGuCAGCGGCGucugcgcACCCGUgACGgGg -3'
miRNA:   3'- gUGa--GCC-GUCGCUGC-------UGGGCA-UGCgC- -5'
22669 5' -58.5 NC_005091.1 + 1037 0.67 0.52779
Target:  5'- gCGCggguucCGGCA-CGACGGCUuccggguCGUACGCGa -3'
miRNA:   3'- -GUGa-----GCCGUcGCUGCUGG-------GCAUGCGC- -5'
22669 5' -58.5 NC_005091.1 + 6178 0.67 0.528813
Target:  5'- gGCUUGcgGGCGACGAgCCGaagcgGCGCGa -3'
miRNA:   3'- gUGAGCcgUCGCUGCUgGGCa----UGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.