miRNA display CGI


Results 1 - 20 of 54 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22682 3' -54.2 NC_005091.1 + 19432 1.13 0.000825
Target:  5'- gACCUACGACCGUCCAAUCGCUGCACCa -3'
miRNA:   3'- -UGGAUGCUGGCAGGUUAGCGACGUGG- -5'
22682 3' -54.2 NC_005091.1 + 57932 0.75 0.292704
Target:  5'- cGCCUGCgcgcugaucGACCG-CCGAUUGCUGCucgACCu -3'
miRNA:   3'- -UGGAUG---------CUGGCaGGUUAGCGACG---UGG- -5'
22682 3' -54.2 NC_005091.1 + 538 0.75 0.292704
Target:  5'- cGCCUGCgcgcugaucGACCG-CCGAUUGCUGCucgACCu -3'
miRNA:   3'- -UGGAUG---------CUGGCaGGUUAGCGACG---UGG- -5'
22682 3' -54.2 NC_005091.1 + 31031 0.75 0.292704
Target:  5'- cGCCggaucGCGGCCGaagUCCAcgCGUUGCAUCg -3'
miRNA:   3'- -UGGa----UGCUGGC---AGGUuaGCGACGUGG- -5'
22682 3' -54.2 NC_005091.1 + 13505 0.75 0.292704
Target:  5'- cGCCga-GACCGUUCAcGUCGCUGCucgacGCCg -3'
miRNA:   3'- -UGGaugCUGGCAGGU-UAGCGACG-----UGG- -5'
22682 3' -54.2 NC_005091.1 + 21634 0.75 0.299353
Target:  5'- gACCggcggGCGGCCGUUCGuucgaacGUCGCcccaUGCGCCg -3'
miRNA:   3'- -UGGa----UGCUGGCAGGU-------UAGCG----ACGUGG- -5'
22682 3' -54.2 NC_005091.1 + 325 0.74 0.355891
Target:  5'- gGCCUGCacgaGAUCGUCCGcgUGCUG-ACCa -3'
miRNA:   3'- -UGGAUG----CUGGCAGGUuaGCGACgUGG- -5'
22682 3' -54.2 NC_005091.1 + 57719 0.74 0.355891
Target:  5'- gGCCUGCacgaGAUCGUCCGcgUGCUG-ACCa -3'
miRNA:   3'- -UGGAUG----CUGGCAGGUuaGCGACgUGG- -5'
22682 3' -54.2 NC_005091.1 + 19499 0.73 0.389997
Target:  5'- gGCCUGCGGgaaguugaaauccCCGaacuucgcggggUCCGGUUGCUGCGCUu -3'
miRNA:   3'- -UGGAUGCU-------------GGC------------AGGUUAGCGACGUGG- -5'
22682 3' -54.2 NC_005091.1 + 34342 0.73 0.418589
Target:  5'- cCCUGCGGCCGgCCGcgcuuGUCGUacUGCACg -3'
miRNA:   3'- uGGAUGCUGGCaGGU-----UAGCG--ACGUGg -5'
22682 3' -54.2 NC_005091.1 + 25245 0.72 0.437697
Target:  5'- gGCCUucgcuaugGCGGCggucggugCGUCCGGggcggcCGCUGCACCg -3'
miRNA:   3'- -UGGA--------UGCUG--------GCAGGUUa-----GCGACGUGG- -5'
22682 3' -54.2 NC_005091.1 + 2909 0.71 0.497842
Target:  5'- cCUUGCGGCCGUCCGGggGUuugaugacaaUGCGCUg -3'
miRNA:   3'- uGGAUGCUGGCAGGUUagCG----------ACGUGG- -5'
22682 3' -54.2 NC_005091.1 + 22843 0.71 0.497842
Target:  5'- cGCCgcugcuCGGCCGccauaUUCGAUUGCUGCACg -3'
miRNA:   3'- -UGGau----GCUGGC-----AGGUUAGCGACGUGg -5'
22682 3' -54.2 NC_005091.1 + 15263 0.71 0.508231
Target:  5'- uACCguUGGCCGUCCGugggCGCUuCACCg -3'
miRNA:   3'- -UGGauGCUGGCAGGUua--GCGAcGUGG- -5'
22682 3' -54.2 NC_005091.1 + 13820 0.71 0.529276
Target:  5'- uCgUGCuGACCGUCa---CGCUGCGCCc -3'
miRNA:   3'- uGgAUG-CUGGCAGguuaGCGACGUGG- -5'
22682 3' -54.2 NC_005091.1 + 31706 0.71 0.529276
Target:  5'- aGCCgcgcCGGCCG-CCu-UCgGCUGCGCCg -3'
miRNA:   3'- -UGGau--GCUGGCaGGuuAG-CGACGUGG- -5'
22682 3' -54.2 NC_005091.1 + 40879 0.7 0.539919
Target:  5'- gACCgUGCaGAgCGcCCAGUCGUUGuCGCCg -3'
miRNA:   3'- -UGG-AUG-CUgGCaGGUUAGCGAC-GUGG- -5'
22682 3' -54.2 NC_005091.1 + 17141 0.7 0.539919
Target:  5'- uACgUAuCGGCCGUaaugCCGGUCuGCUGCACg -3'
miRNA:   3'- -UGgAU-GCUGGCA----GGUUAG-CGACGUGg -5'
22682 3' -54.2 NC_005091.1 + 54958 0.7 0.561411
Target:  5'- cGCCgcGCGGCUGUCCcGUUuuCUGCGCCc -3'
miRNA:   3'- -UGGa-UGCUGGCAGGuUAGc-GACGUGG- -5'
22682 3' -54.2 NC_005091.1 + 51905 0.7 0.561411
Target:  5'- cGCC-AUGGCCGUacaCAAUCGC-GCGCa -3'
miRNA:   3'- -UGGaUGCUGGCAg--GUUAGCGaCGUGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.