miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22682 3' -54.2 NC_005091.1 + 325 0.74 0.355891
Target:  5'- gGCCUGCacgaGAUCGUCCGcgUGCUG-ACCa -3'
miRNA:   3'- -UGGAUG----CUGGCAGGUuaGCGACgUGG- -5'
22682 3' -54.2 NC_005091.1 + 538 0.75 0.292704
Target:  5'- cGCCUGCgcgcugaucGACCG-CCGAUUGCUGCucgACCu -3'
miRNA:   3'- -UGGAUG---------CUGGCaGGUUAGCGACG---UGG- -5'
22682 3' -54.2 NC_005091.1 + 2732 0.67 0.724906
Target:  5'- cACCUGCGACaaCGggucuuccCCGAUaGuCUGCGCCg -3'
miRNA:   3'- -UGGAUGCUG--GCa-------GGUUAgC-GACGUGG- -5'
22682 3' -54.2 NC_005091.1 + 2909 0.71 0.497842
Target:  5'- cCUUGCGGCCGUCCGGggGUuugaugacaaUGCGCUg -3'
miRNA:   3'- uGGAUGCUGGCAGGUUagCG----------ACGUGG- -5'
22682 3' -54.2 NC_005091.1 + 4982 0.68 0.68618
Target:  5'- cUCUuCGACCGUggaagcgcgaagcauUCGAUCGCguccUGCGCCg -3'
miRNA:   3'- uGGAuGCUGGCA---------------GGUUAGCG----ACGUGG- -5'
22682 3' -54.2 NC_005091.1 + 5299 0.66 0.786528
Target:  5'- uCCgggGCGGCCGUUgCAcUCcUUGCACCg -3'
miRNA:   3'- uGGa--UGCUGGCAG-GUuAGcGACGUGG- -5'
22682 3' -54.2 NC_005091.1 + 7173 0.68 0.700269
Target:  5'- uGCCggcagcgGCGGCCGUCUcgaugcccuucaggAGUCGCUugGCgGCCu -3'
miRNA:   3'- -UGGa------UGCUGGCAGG--------------UUAGCGA--CG-UGG- -5'
22682 3' -54.2 NC_005091.1 + 9965 0.67 0.714246
Target:  5'- gGCCccggcuCGAucCCGUCCGGUCaGCcaagcaccUGCACCg -3'
miRNA:   3'- -UGGau----GCU--GGCAGGUUAG-CG--------ACGUGG- -5'
22682 3' -54.2 NC_005091.1 + 10973 0.66 0.815327
Target:  5'- uGCCUACaGGCCGgccgCCGGgucgaGCUGUuucCCg -3'
miRNA:   3'- -UGGAUG-CUGGCa---GGUUag---CGACGu--GG- -5'
22682 3' -54.2 NC_005091.1 + 13393 0.66 0.796302
Target:  5'- cGCCUACGACC--UCGAUCGgUGgUACg -3'
miRNA:   3'- -UGGAUGCUGGcaGGUUAGCgAC-GUGg -5'
22682 3' -54.2 NC_005091.1 + 13505 0.75 0.292704
Target:  5'- cGCCga-GACCGUUCAcGUCGCUGCucgacGCCg -3'
miRNA:   3'- -UGGaugCUGGCAGGU-UAGCGACG-----UGG- -5'
22682 3' -54.2 NC_005091.1 + 13820 0.71 0.529276
Target:  5'- uCgUGCuGACCGUCa---CGCUGCGCCc -3'
miRNA:   3'- uGgAUG-CUGGCAGguuaGCGACGUGG- -5'
22682 3' -54.2 NC_005091.1 + 14474 0.66 0.796302
Target:  5'- cGCCguaGCGAUCGUgaCAgggcugcugaacGUCGgUGCGCCg -3'
miRNA:   3'- -UGGa--UGCUGGCAg-GU------------UAGCgACGUGG- -5'
22682 3' -54.2 NC_005091.1 + 15230 0.69 0.637986
Target:  5'- uGCC-ACGuaGCCGUCC---CGCUGcCGCCg -3'
miRNA:   3'- -UGGaUGC--UGGCAGGuuaGCGAC-GUGG- -5'
22682 3' -54.2 NC_005091.1 + 15263 0.71 0.508231
Target:  5'- uACCguUGGCCGUCCGugggCGCUuCACCg -3'
miRNA:   3'- -UGGauGCUGGCAGGUua--GCGAcGUGG- -5'
22682 3' -54.2 NC_005091.1 + 15317 0.67 0.735474
Target:  5'- cCCUGCGauGCCGaCCAugugAUCGCcUGC-CCg -3'
miRNA:   3'- uGGAUGC--UGGCaGGU----UAGCG-ACGuGG- -5'
22682 3' -54.2 NC_005091.1 + 15712 0.67 0.735474
Target:  5'- aACCUACuACCGcUCCAAcagCGCUccGCuuGCCg -3'
miRNA:   3'- -UGGAUGcUGGC-AGGUUa--GCGA--CG--UGG- -5'
22682 3' -54.2 NC_005091.1 + 17141 0.7 0.539919
Target:  5'- uACgUAuCGGCCGUaaugCCGGUCuGCUGCACg -3'
miRNA:   3'- -UGgAU-GCUGGCA----GGUUAG-CGACGUGg -5'
22682 3' -54.2 NC_005091.1 + 19432 1.13 0.000825
Target:  5'- gACCUACGACCGUCCAAUCGCUGCACCa -3'
miRNA:   3'- -UGGAUGCUGGCAGGUUAGCGACGUGG- -5'
22682 3' -54.2 NC_005091.1 + 19499 0.73 0.389997
Target:  5'- gGCCUGCGGgaaguugaaauccCCGaacuucgcggggUCCGGUUGCUGCGCUu -3'
miRNA:   3'- -UGGAUGCU-------------GGC------------AGGUUAGCGACGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.