miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22682 3' -54.2 NC_005091.1 + 13505 0.75 0.292704
Target:  5'- cGCCga-GACCGUUCAcGUCGCUGCucgacGCCg -3'
miRNA:   3'- -UGGaugCUGGCAGGU-UAGCGACG-----UGG- -5'
22682 3' -54.2 NC_005091.1 + 15230 0.69 0.637986
Target:  5'- uGCC-ACGuaGCCGUCC---CGCUGcCGCCg -3'
miRNA:   3'- -UGGaUGC--UGGCAGGuuaGCGAC-GUGG- -5'
22682 3' -54.2 NC_005091.1 + 23371 0.69 0.626987
Target:  5'- uCCUACGgcaGCCGgggcagCCGA-CGCaGCGCCg -3'
miRNA:   3'- uGGAUGC---UGGCa-----GGUUaGCGaCGUGG- -5'
22682 3' -54.2 NC_005091.1 + 23286 0.69 0.605013
Target:  5'- uGCCgccCGGCUGaCCGA-CGaCUGCACCg -3'
miRNA:   3'- -UGGau-GCUGGCaGGUUaGC-GACGUGG- -5'
22682 3' -54.2 NC_005091.1 + 39876 0.7 0.572247
Target:  5'- uCCUugcgauagaacGCGGCCGaCCAuccgGCUGCGCCa -3'
miRNA:   3'- uGGA-----------UGCUGGCaGGUuag-CGACGUGG- -5'
22682 3' -54.2 NC_005091.1 + 54958 0.7 0.561411
Target:  5'- cGCCgcGCGGCUGUCCcGUUuuCUGCGCCc -3'
miRNA:   3'- -UGGa-UGCUGGCAGGuUAGc-GACGUGG- -5'
22682 3' -54.2 NC_005091.1 + 40879 0.7 0.539919
Target:  5'- gACCgUGCaGAgCGcCCAGUCGUUGuCGCCg -3'
miRNA:   3'- -UGG-AUG-CUgGCaGGUUAGCGAC-GUGG- -5'
22682 3' -54.2 NC_005091.1 + 17141 0.7 0.539919
Target:  5'- uACgUAuCGGCCGUaaugCCGGUCuGCUGCACg -3'
miRNA:   3'- -UGgAU-GCUGGCA----GGUUAG-CGACGUGg -5'
22682 3' -54.2 NC_005091.1 + 31706 0.71 0.529276
Target:  5'- aGCCgcgcCGGCCG-CCu-UCgGCUGCGCCg -3'
miRNA:   3'- -UGGau--GCUGGCaGGuuAG-CGACGUGG- -5'
22682 3' -54.2 NC_005091.1 + 13820 0.71 0.529276
Target:  5'- uCgUGCuGACCGUCa---CGCUGCGCCc -3'
miRNA:   3'- uGgAUG-CUGGCAGguuaGCGACGUGG- -5'
22682 3' -54.2 NC_005091.1 + 15263 0.71 0.508231
Target:  5'- uACCguUGGCCGUCCGugggCGCUuCACCg -3'
miRNA:   3'- -UGGauGCUGGCAGGUua--GCGAcGUGG- -5'
22682 3' -54.2 NC_005091.1 + 22843 0.71 0.497842
Target:  5'- cGCCgcugcuCGGCCGccauaUUCGAUUGCUGCACg -3'
miRNA:   3'- -UGGau----GCUGGC-----AGGUUAGCGACGUGg -5'
22682 3' -54.2 NC_005091.1 + 2909 0.71 0.497842
Target:  5'- cCUUGCGGCCGUCCGGggGUuugaugacaaUGCGCUg -3'
miRNA:   3'- uGGAUGCUGGCAGGUUagCG----------ACGUGG- -5'
22682 3' -54.2 NC_005091.1 + 34342 0.73 0.418589
Target:  5'- cCCUGCGGCCGgCCGcgcuuGUCGUacUGCACg -3'
miRNA:   3'- uGGAUGCUGGCaGGU-----UAGCG--ACGUGg -5'
22682 3' -54.2 NC_005091.1 + 19499 0.73 0.389997
Target:  5'- gGCCUGCGGgaaguugaaauccCCGaacuucgcggggUCCGGUUGCUGCGCUu -3'
miRNA:   3'- -UGGAUGCU-------------GGC------------AGGUUAGCGACGUGG- -5'
22682 3' -54.2 NC_005091.1 + 57719 0.74 0.355891
Target:  5'- gGCCUGCacgaGAUCGUCCGcgUGCUG-ACCa -3'
miRNA:   3'- -UGGAUG----CUGGCAGGUuaGCGACgUGG- -5'
22682 3' -54.2 NC_005091.1 + 325 0.74 0.355891
Target:  5'- gGCCUGCacgaGAUCGUCCGcgUGCUG-ACCa -3'
miRNA:   3'- -UGGAUG----CUGGCAGGUuaGCGACgUGG- -5'
22682 3' -54.2 NC_005091.1 + 21634 0.75 0.299353
Target:  5'- gACCggcggGCGGCCGUUCGuucgaacGUCGCcccaUGCGCCg -3'
miRNA:   3'- -UGGa----UGCUGGCAGGU-------UAGCG----ACGUGG- -5'
22682 3' -54.2 NC_005091.1 + 31031 0.75 0.292704
Target:  5'- cGCCggaucGCGGCCGaagUCCAcgCGUUGCAUCg -3'
miRNA:   3'- -UGGa----UGCUGGC---AGGUuaGCGACGUGG- -5'
22682 3' -54.2 NC_005091.1 + 19432 1.13 0.000825
Target:  5'- gACCUACGACCGUCCAAUCGCUGCACCa -3'
miRNA:   3'- -UGGAUGCUGGCAGGUUAGCGACGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.