miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22682 3' -54.2 NC_005091.1 + 51905 0.7 0.561411
Target:  5'- cGCC-AUGGCCGUacaCAAUCGC-GCGCa -3'
miRNA:   3'- -UGGaUGCUGGCAg--GUUAGCGaCGUGg -5'
22682 3' -54.2 NC_005091.1 + 10973 0.66 0.815327
Target:  5'- uGCCUACaGGCCGgccgCCGGgucgaGCUGUuucCCg -3'
miRNA:   3'- -UGGAUG-CUGGCa---GGUUag---CGACGu--GG- -5'
22682 3' -54.2 NC_005091.1 + 36871 0.66 0.796302
Target:  5'- gACCgaguucGCuGGCCGUCCGAUCgGCcGCguauGCCu -3'
miRNA:   3'- -UGGa-----UG-CUGGCAGGUUAG-CGaCG----UGG- -5'
22682 3' -54.2 NC_005091.1 + 33559 0.68 0.703506
Target:  5'- gACCUAUGAgCGcgaAAUCGC-GCGCCu -3'
miRNA:   3'- -UGGAUGCUgGCaggUUAGCGaCGUGG- -5'
22682 3' -54.2 NC_005091.1 + 7173 0.68 0.700269
Target:  5'- uGCCggcagcgGCGGCCGUCUcgaugcccuucaggAGUCGCUugGCgGCCu -3'
miRNA:   3'- -UGGa------UGCUGGCAGG--------------UUAGCGA--CG-UGG- -5'
22682 3' -54.2 NC_005091.1 + 13393 0.66 0.796302
Target:  5'- cGCCUACGACC--UCGAUCGgUGgUACg -3'
miRNA:   3'- -UGGAUGCUGGcaGGUUAGCgAC-GUGg -5'
22682 3' -54.2 NC_005091.1 + 15712 0.67 0.735474
Target:  5'- aACCUACuACCGcUCCAAcagCGCUccGCuuGCCg -3'
miRNA:   3'- -UGGAUGcUGGC-AGGUUa--GCGA--CG--UGG- -5'
22682 3' -54.2 NC_005091.1 + 2732 0.67 0.724906
Target:  5'- cACCUGCGACaaCGggucuuccCCGAUaGuCUGCGCCg -3'
miRNA:   3'- -UGGAUGCUG--GCa-------GGUUAgC-GACGUGG- -5'
22682 3' -54.2 NC_005091.1 + 29702 0.7 0.583131
Target:  5'- aGCgUACGGCCcUCCcgcUCGCccGCACCg -3'
miRNA:   3'- -UGgAUGCUGGcAGGuu-AGCGa-CGUGG- -5'
22682 3' -54.2 NC_005091.1 + 57932 0.75 0.292704
Target:  5'- cGCCUGCgcgcugaucGACCG-CCGAUUGCUGCucgACCu -3'
miRNA:   3'- -UGGAUG---------CUGGCaGGUUAGCGACG---UGG- -5'
22682 3' -54.2 NC_005091.1 + 55938 0.67 0.756287
Target:  5'- gGCCgugcagcuCGugCG-CCAGUUgcugaccgGCUGCGCCg -3'
miRNA:   3'- -UGGau------GCugGCaGGUUAG--------CGACGUGG- -5'
22682 3' -54.2 NC_005091.1 + 5299 0.66 0.786528
Target:  5'- uCCgggGCGGCCGUUgCAcUCcUUGCACCg -3'
miRNA:   3'- uGGa--UGCUGGCAG-GUuAGcGACGUGG- -5'
22682 3' -54.2 NC_005091.1 + 51234 0.68 0.681826
Target:  5'- ---aACGGCCGU-CAAUCGCcGCGCg -3'
miRNA:   3'- uggaUGCUGGCAgGUUAGCGaCGUGg -5'
22682 3' -54.2 NC_005091.1 + 37008 0.69 0.626987
Target:  5'- uCCgUGCGACgGaUCGAUCGUaUGCACCg -3'
miRNA:   3'- uGG-AUGCUGgCaGGUUAGCG-ACGUGG- -5'
22682 3' -54.2 NC_005091.1 + 52950 0.67 0.756287
Target:  5'- uACCUgaucGCGGCCGgCUGcaaacaaaucGUCGgaGCGCCg -3'
miRNA:   3'- -UGGA----UGCUGGCaGGU----------UAGCgaCGUGG- -5'
22682 3' -54.2 NC_005091.1 + 538 0.75 0.292704
Target:  5'- cGCCUGCgcgcugaucGACCG-CCGAUUGCUGCucgACCu -3'
miRNA:   3'- -UGGAUG---------CUGGCaGGUUAGCGACG---UGG- -5'
22682 3' -54.2 NC_005091.1 + 50817 0.67 0.735474
Target:  5'- aGCgUGCGGCCGUCguGcgCGCgGCuauCCg -3'
miRNA:   3'- -UGgAUGCUGGCAGguUa-GCGaCGu--GG- -5'
22682 3' -54.2 NC_005091.1 + 52757 0.68 0.681826
Target:  5'- gGCgUGCGcgcCCGUCUggUCGUgucGUACCu -3'
miRNA:   3'- -UGgAUGCu--GGCAGGuuAGCGa--CGUGG- -5'
22682 3' -54.2 NC_005091.1 + 25245 0.72 0.437697
Target:  5'- gGCCUucgcuaugGCGGCggucggugCGUCCGGggcggcCGCUGCACCg -3'
miRNA:   3'- -UGGA--------UGCUG--------GCAGGUUa-----GCGACGUGG- -5'
22682 3' -54.2 NC_005091.1 + 13820 0.71 0.529276
Target:  5'- uCgUGCuGACCGUCa---CGCUGCGCCc -3'
miRNA:   3'- uGgAUG-CUGGCAGguuaGCGACGUGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.