Results 1 - 20 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22682 | 3' | -54.2 | NC_005091.1 | + | 51905 | 0.7 | 0.561411 |
Target: 5'- cGCC-AUGGCCGUacaCAAUCGC-GCGCa -3' miRNA: 3'- -UGGaUGCUGGCAg--GUUAGCGaCGUGg -5' |
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22682 | 3' | -54.2 | NC_005091.1 | + | 10973 | 0.66 | 0.815327 |
Target: 5'- uGCCUACaGGCCGgccgCCGGgucgaGCUGUuucCCg -3' miRNA: 3'- -UGGAUG-CUGGCa---GGUUag---CGACGu--GG- -5' |
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22682 | 3' | -54.2 | NC_005091.1 | + | 36871 | 0.66 | 0.796302 |
Target: 5'- gACCgaguucGCuGGCCGUCCGAUCgGCcGCguauGCCu -3' miRNA: 3'- -UGGa-----UG-CUGGCAGGUUAG-CGaCG----UGG- -5' |
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22682 | 3' | -54.2 | NC_005091.1 | + | 33559 | 0.68 | 0.703506 |
Target: 5'- gACCUAUGAgCGcgaAAUCGC-GCGCCu -3' miRNA: 3'- -UGGAUGCUgGCaggUUAGCGaCGUGG- -5' |
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22682 | 3' | -54.2 | NC_005091.1 | + | 7173 | 0.68 | 0.700269 |
Target: 5'- uGCCggcagcgGCGGCCGUCUcgaugcccuucaggAGUCGCUugGCgGCCu -3' miRNA: 3'- -UGGa------UGCUGGCAGG--------------UUAGCGA--CG-UGG- -5' |
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22682 | 3' | -54.2 | NC_005091.1 | + | 13393 | 0.66 | 0.796302 |
Target: 5'- cGCCUACGACC--UCGAUCGgUGgUACg -3' miRNA: 3'- -UGGAUGCUGGcaGGUUAGCgAC-GUGg -5' |
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22682 | 3' | -54.2 | NC_005091.1 | + | 15712 | 0.67 | 0.735474 |
Target: 5'- aACCUACuACCGcUCCAAcagCGCUccGCuuGCCg -3' miRNA: 3'- -UGGAUGcUGGC-AGGUUa--GCGA--CG--UGG- -5' |
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22682 | 3' | -54.2 | NC_005091.1 | + | 2732 | 0.67 | 0.724906 |
Target: 5'- cACCUGCGACaaCGggucuuccCCGAUaGuCUGCGCCg -3' miRNA: 3'- -UGGAUGCUG--GCa-------GGUUAgC-GACGUGG- -5' |
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22682 | 3' | -54.2 | NC_005091.1 | + | 29702 | 0.7 | 0.583131 |
Target: 5'- aGCgUACGGCCcUCCcgcUCGCccGCACCg -3' miRNA: 3'- -UGgAUGCUGGcAGGuu-AGCGa-CGUGG- -5' |
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22682 | 3' | -54.2 | NC_005091.1 | + | 57932 | 0.75 | 0.292704 |
Target: 5'- cGCCUGCgcgcugaucGACCG-CCGAUUGCUGCucgACCu -3' miRNA: 3'- -UGGAUG---------CUGGCaGGUUAGCGACG---UGG- -5' |
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22682 | 3' | -54.2 | NC_005091.1 | + | 55938 | 0.67 | 0.756287 |
Target: 5'- gGCCgugcagcuCGugCG-CCAGUUgcugaccgGCUGCGCCg -3' miRNA: 3'- -UGGau------GCugGCaGGUUAG--------CGACGUGG- -5' |
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22682 | 3' | -54.2 | NC_005091.1 | + | 5299 | 0.66 | 0.786528 |
Target: 5'- uCCgggGCGGCCGUUgCAcUCcUUGCACCg -3' miRNA: 3'- uGGa--UGCUGGCAG-GUuAGcGACGUGG- -5' |
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22682 | 3' | -54.2 | NC_005091.1 | + | 51234 | 0.68 | 0.681826 |
Target: 5'- ---aACGGCCGU-CAAUCGCcGCGCg -3' miRNA: 3'- uggaUGCUGGCAgGUUAGCGaCGUGg -5' |
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22682 | 3' | -54.2 | NC_005091.1 | + | 37008 | 0.69 | 0.626987 |
Target: 5'- uCCgUGCGACgGaUCGAUCGUaUGCACCg -3' miRNA: 3'- uGG-AUGCUGgCaGGUUAGCG-ACGUGG- -5' |
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22682 | 3' | -54.2 | NC_005091.1 | + | 52950 | 0.67 | 0.756287 |
Target: 5'- uACCUgaucGCGGCCGgCUGcaaacaaaucGUCGgaGCGCCg -3' miRNA: 3'- -UGGA----UGCUGGCaGGU----------UAGCgaCGUGG- -5' |
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22682 | 3' | -54.2 | NC_005091.1 | + | 538 | 0.75 | 0.292704 |
Target: 5'- cGCCUGCgcgcugaucGACCG-CCGAUUGCUGCucgACCu -3' miRNA: 3'- -UGGAUG---------CUGGCaGGUUAGCGACG---UGG- -5' |
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22682 | 3' | -54.2 | NC_005091.1 | + | 50817 | 0.67 | 0.735474 |
Target: 5'- aGCgUGCGGCCGUCguGcgCGCgGCuauCCg -3' miRNA: 3'- -UGgAUGCUGGCAGguUa-GCGaCGu--GG- -5' |
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22682 | 3' | -54.2 | NC_005091.1 | + | 52757 | 0.68 | 0.681826 |
Target: 5'- gGCgUGCGcgcCCGUCUggUCGUgucGUACCu -3' miRNA: 3'- -UGgAUGCu--GGCAGGuuAGCGa--CGUGG- -5' |
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22682 | 3' | -54.2 | NC_005091.1 | + | 25245 | 0.72 | 0.437697 |
Target: 5'- gGCCUucgcuaugGCGGCggucggugCGUCCGGggcggcCGCUGCACCg -3' miRNA: 3'- -UGGA--------UGCUG--------GCAGGUUa-----GCGACGUGG- -5' |
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22682 | 3' | -54.2 | NC_005091.1 | + | 13820 | 0.71 | 0.529276 |
Target: 5'- uCgUGCuGACCGUCa---CGCUGCGCCc -3' miRNA: 3'- uGgAUG-CUGGCAGguuaGCGACGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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