miRNA display CGI


Results 21 - 40 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22701 3' -49.6 NC_005091.1 + 15683 0.71 0.776695
Target:  5'- gGACCAAACG-UCGuguuuUGAGCcgaACCGGa -3'
miRNA:   3'- gCUGGUUUGCuAGCu----ACUUG---UGGCCg -5'
22701 3' -49.6 NC_005091.1 + 31521 0.71 0.786844
Target:  5'- cCGGCCcGGCGcuGUCGAUG--UACUGGCa -3'
miRNA:   3'- -GCUGGuUUGC--UAGCUACuuGUGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 16363 0.71 0.786844
Target:  5'- gCGGCCAAGCGA-CGugGAACGugcUCGGCg -3'
miRNA:   3'- -GCUGGUUUGCUaGCuaCUUGU---GGCCG- -5'
22701 3' -49.6 NC_005091.1 + 3333 0.71 0.786844
Target:  5'- cCGAUCAuGCGcggguugaagucAUCGAUcGAGCGgCCGGCg -3'
miRNA:   3'- -GCUGGUuUGC------------UAGCUA-CUUGU-GGCCG- -5'
22701 3' -49.6 NC_005091.1 + 55958 0.71 0.806627
Target:  5'- gCGACCGG--GAUCGAUGGucAgGCCGuGCa -3'
miRNA:   3'- -GCUGGUUugCUAGCUACU--UgUGGC-CG- -5'
22701 3' -49.6 NC_005091.1 + 15744 0.71 0.806627
Target:  5'- -cGCCAuuCGuAUCGAUGAACcgcaGCuCGGCa -3'
miRNA:   3'- gcUGGUuuGC-UAGCUACUUG----UG-GCCG- -5'
22701 3' -49.6 NC_005091.1 + 3558 0.71 0.816237
Target:  5'- aCGACCAucUGGUCGAUGu-CGCCGucuGCc -3'
miRNA:   3'- -GCUGGUuuGCUAGCUACuuGUGGC---CG- -5'
22701 3' -49.6 NC_005091.1 + 1251 0.71 0.816237
Target:  5'- gGGCCGGAUG-UCGGaaggcuggggcGAAUACCGGCa -3'
miRNA:   3'- gCUGGUUUGCuAGCUa----------CUUGUGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 15413 0.71 0.816237
Target:  5'- aCGuCCGGagacGCGAaaUCGAUGAACACCugaucGGUg -3'
miRNA:   3'- -GCuGGUU----UGCU--AGCUACUUGUGG-----CCG- -5'
22701 3' -49.6 NC_005091.1 + 657 0.7 0.822846
Target:  5'- uCGACCGGGC-AUCGcgGAaaucuacgcggacuGCGCCGcGCg -3'
miRNA:   3'- -GCUGGUUUGcUAGCuaCU--------------UGUGGC-CG- -5'
22701 3' -49.6 NC_005091.1 + 22007 0.7 0.825646
Target:  5'- uCGACCAGACuacgggcaacgaGAUCGuuaccGUGGACG-CGGCg -3'
miRNA:   3'- -GCUGGUUUG------------CUAGC-----UACUUGUgGCCG- -5'
22701 3' -49.6 NC_005091.1 + 33309 0.7 0.825646
Target:  5'- gCGGgCAGAUGGUCGccGcgcauuACGCCGGCc -3'
miRNA:   3'- -GCUgGUUUGCUAGCuaCu-----UGUGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 8116 0.7 0.825646
Target:  5'- gCGAcCCAGugGG-CGAagGAGC-CCGGCa -3'
miRNA:   3'- -GCU-GGUUugCUaGCUa-CUUGuGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 38710 0.7 0.834843
Target:  5'- -cGCCAucaaGAUGAcCGAUGAGCAgUCGGCu -3'
miRNA:   3'- gcUGGU----UUGCUaGCUACUUGU-GGCCG- -5'
22701 3' -49.6 NC_005091.1 + 50947 0.7 0.834843
Target:  5'- gCGACCGcaaGcgCGGUGcGCACgGGCa -3'
miRNA:   3'- -GCUGGUuugCuaGCUACuUGUGgCCG- -5'
22701 3' -49.6 NC_005091.1 + 34770 0.7 0.84115
Target:  5'- cCGGCCGcgcgcgucGGCGAUCcgcuucagcggguuGAUGAggGCAuCCGGCg -3'
miRNA:   3'- -GCUGGU--------UUGCUAG--------------CUACU--UGU-GGCCG- -5'
22701 3' -49.6 NC_005091.1 + 25211 0.7 0.843818
Target:  5'- gCGGCCGcugcaccGgGGUCGAUGca-GCCGGCg -3'
miRNA:   3'- -GCUGGUu------UgCUAGCUACuugUGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 13388 0.7 0.843818
Target:  5'- aCGACCu--CGAUCGGUGGuACGugggUCGGUa -3'
miRNA:   3'- -GCUGGuuuGCUAGCUACU-UGU----GGCCG- -5'
22701 3' -49.6 NC_005091.1 + 24175 0.7 0.861063
Target:  5'- aGACCGAACGAUCGcaaccGAaacuuGCGCagauGGCg -3'
miRNA:   3'- gCUGGUUUGCUAGCua---CU-----UGUGg---CCG- -5'
22701 3' -49.6 NC_005091.1 + 22914 0.7 0.861063
Target:  5'- gGACCAuuCGGUCGcgGAAgACCa-- -3'
miRNA:   3'- gCUGGUuuGCUAGCuaCUUgUGGccg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.