miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22701 3' -49.6 NC_005091.1 + 57840 0.66 0.973653
Target:  5'- uCGAgCAGcaaucgGCGGUCGAUcAGCGCgcaGGCg -3'
miRNA:   3'- -GCUgGUU------UGCUAGCUAcUUGUGg--CCG- -5'
22701 3' -49.6 NC_005091.1 + 57788 0.76 0.54581
Target:  5'- gCGGCCAAGCGG-CGGggaGAGCGCgCGGUu -3'
miRNA:   3'- -GCUGGUUUGCUaGCUa--CUUGUG-GCCG- -5'
22701 3' -49.6 NC_005091.1 + 57325 0.69 0.869315
Target:  5'- -uGCgGGAUGAUCGGcuuguccgguUGGugGCCGGCc -3'
miRNA:   3'- gcUGgUUUGCUAGCU----------ACUugUGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 57108 0.68 0.906599
Target:  5'- gCGGCCGAGCGGcUGuauaucGAACGCCaGCu -3'
miRNA:   3'- -GCUGGUUUGCUaGCua----CUUGUGGcCG- -5'
22701 3' -49.6 NC_005091.1 + 56772 0.67 0.955898
Target:  5'- gCGAgCAucuCGGUCGGUuGAuCGCgGGCa -3'
miRNA:   3'- -GCUgGUuu-GCUAGCUA-CUuGUGgCCG- -5'
22701 3' -49.6 NC_005091.1 + 56598 0.66 0.973653
Target:  5'- uCGuuCAAAgGGUUGAUGGguuuGCGCCaaGGCg -3'
miRNA:   3'- -GCugGUUUgCUAGCUACU----UGUGG--CCG- -5'
22701 3' -49.6 NC_005091.1 + 55958 0.71 0.806627
Target:  5'- gCGACCGG--GAUCGAUGGucAgGCCGuGCa -3'
miRNA:   3'- -GCUGGUUugCUAGCUACU--UgUGGC-CG- -5'
22701 3' -49.6 NC_005091.1 + 55111 0.67 0.945493
Target:  5'- aGGCCcccaaaguaagcacGAGgGGUCGucagcacgGGAUACCGGCg -3'
miRNA:   3'- gCUGG--------------UUUgCUAGCua------CUUGUGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 55058 0.67 0.942032
Target:  5'- cCGGCCGGACGAggggCGcagaaaacgGGACAgCCGcGCg -3'
miRNA:   3'- -GCUGGUUUGCUa---GCua-------CUUGU-GGC-CG- -5'
22701 3' -49.6 NC_005091.1 + 53599 0.66 0.967316
Target:  5'- -uACUGGAUGGUucgcCGAUGAACA-CGGCg -3'
miRNA:   3'- gcUGGUUUGCUA----GCUACUUGUgGCCG- -5'
22701 3' -49.6 NC_005091.1 + 52678 0.79 0.374683
Target:  5'- aCGACCAGACGggCGcgc-ACGCCGGCc -3'
miRNA:   3'- -GCUGGUUUGCuaGCuacuUGUGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 51056 0.66 0.968662
Target:  5'- aCGACUAu-CGAUCGcuugccgauuugcccGUGcGCACCGcGCu -3'
miRNA:   3'- -GCUGGUuuGCUAGC---------------UACuUGUGGC-CG- -5'
22701 3' -49.6 NC_005091.1 + 50977 0.67 0.955898
Target:  5'- uCGG-CAAGCGAUCGAUaGucguGCAUggCGGCg -3'
miRNA:   3'- -GCUgGUUUGCUAGCUA-Cu---UGUG--GCCG- -5'
22701 3' -49.6 NC_005091.1 + 50947 0.7 0.834843
Target:  5'- gCGACCGcaaGcgCGGUGcGCACgGGCa -3'
miRNA:   3'- -GCUGGUuugCuaGCUACuUGUGgCCG- -5'
22701 3' -49.6 NC_005091.1 + 50354 0.69 0.885043
Target:  5'- uGGCUgAGACGAUCGccGcAAUGCCGGUc -3'
miRNA:   3'- gCUGG-UUUGCUAGCuaC-UUGUGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 50237 0.68 0.92561
Target:  5'- uCGGCCGcgUGAU-GAUGAAgGgCGGCc -3'
miRNA:   3'- -GCUGGUuuGCUAgCUACUUgUgGCCG- -5'
22701 3' -49.6 NC_005091.1 + 49273 0.67 0.951555
Target:  5'- -aGCCGcACGucauccgcAUCGGUGggUACUGGUa -3'
miRNA:   3'- gcUGGUuUGC--------UAGCUACuuGUGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 48601 0.67 0.955898
Target:  5'- aCGAUCAAACGaAUCGucuaGugACgCGGCg -3'
miRNA:   3'- -GCUGGUUUGC-UAGCuac-UugUG-GCCG- -5'
22701 3' -49.6 NC_005091.1 + 46015 0.7 0.861063
Target:  5'- uGGCCu-GCGcAUCGAcgcgGcgcAACACCGGCa -3'
miRNA:   3'- gCUGGuuUGC-UAGCUa---C---UUGUGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 45979 0.66 0.963772
Target:  5'- aGGCCAAGCu-UCGAggcUGGACGCUGa- -3'
miRNA:   3'- gCUGGUUUGcuAGCU---ACUUGUGGCcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.