Results 1 - 20 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22701 | 3' | -49.6 | NC_005091.1 | + | 56598 | 0.66 | 0.973653 |
Target: 5'- uCGuuCAAAgGGUUGAUGGguuuGCGCCaaGGCg -3' miRNA: 3'- -GCugGUUUgCUAGCUACU----UGUGG--CCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 13600 | 0.67 | 0.936845 |
Target: 5'- gCGACCcGGCG-UCGAgcagcgacgUGAACGgucUCGGCg -3' miRNA: 3'- -GCUGGuUUGCuAGCU---------ACUUGU---GGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 50237 | 0.68 | 0.92561 |
Target: 5'- uCGGCCGcgUGAU-GAUGAAgGgCGGCc -3' miRNA: 3'- -GCUGGUuuGCUAgCUACUUgUgGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 9775 | 0.79 | 0.392911 |
Target: 5'- gCGGCUGAAggccCGGUCGAUGAGuCGCUGGCc -3' miRNA: 3'- -GCUGGUUU----GCUAGCUACUU-GUGGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 53599 | 0.66 | 0.967316 |
Target: 5'- -uACUGGAUGGUucgcCGAUGAACA-CGGCg -3' miRNA: 3'- gcUGGUUUGCUA----GCUACUUGUgGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 36815 | 0.66 | 0.963772 |
Target: 5'- -uGCCGGACGA-CGuUGAugGCgaCGGCg -3' miRNA: 3'- gcUGGUUUGCUaGCuACUugUG--GCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 38515 | 0.66 | 0.959968 |
Target: 5'- aGACCuGACGcaacuuGUCGAaGAGCugaaCGGCg -3' miRNA: 3'- gCUGGuUUGC------UAGCUaCUUGug--GCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 16607 | 0.66 | 0.959968 |
Target: 5'- gCGACCGGcuCGGguaucccCGA--AGCGCCGGCa -3' miRNA: 3'- -GCUGGUUu-GCUa------GCUacUUGUGGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 14017 | 0.67 | 0.946934 |
Target: 5'- cCGcACCGaaGugGAUCGAcucgucGCGCCGGUa -3' miRNA: 3'- -GC-UGGU--UugCUAGCUacu---UGUGGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 40370 | 0.67 | 0.942032 |
Target: 5'- -uGCCGAGCGGUCGccGGAUguacuaccaucgACCGcGCa -3' miRNA: 3'- gcUGGUUUGCUAGCuaCUUG------------UGGC-CG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 55111 | 0.67 | 0.945493 |
Target: 5'- aGGCCcccaaaguaagcacGAGgGGUCGucagcacgGGAUACCGGCg -3' miRNA: 3'- gCUGG--------------UUUgCUAGCua------CUUGUGGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 49273 | 0.67 | 0.951555 |
Target: 5'- -aGCCGcACGucauccgcAUCGGUGggUACUGGUa -3' miRNA: 3'- gcUGGUuUGC--------UAGCUACuuGUGGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 25957 | 0.66 | 0.973653 |
Target: 5'- aCGugCAGGCGcaaGccGAACGCCucGGCa -3' miRNA: 3'- -GCugGUUUGCuagCuaCUUGUGG--CCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 22064 | 0.67 | 0.942032 |
Target: 5'- uCGACCc-GCG-UCGGUcGACaguGCCGGCa -3' miRNA: 3'- -GCUGGuuUGCuAGCUAcUUG---UGGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 32250 | 0.66 | 0.970607 |
Target: 5'- cCGAuCCGGcCGAUaCGAgcaaGAACGCCacGGCg -3' miRNA: 3'- -GCU-GGUUuGCUA-GCUa---CUUGUGG--CCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 31678 | 0.66 | 0.959968 |
Target: 5'- -cGCCAAGCagccuUCGcgGGcACGCCGGUg -3' miRNA: 3'- gcUGGUUUGcu---AGCuaCU-UGUGGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 55058 | 0.67 | 0.942032 |
Target: 5'- cCGGCCGGACGAggggCGcagaaaacgGGACAgCCGcGCg -3' miRNA: 3'- -GCUGGUUUGCUa---GCua-------CUUGU-GGC-CG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 18987 | 0.68 | 0.931372 |
Target: 5'- gCGACUGGccGCGAugcUCGGcgGAAUcguGCCGGCg -3' miRNA: 3'- -GCUGGUU--UGCU---AGCUa-CUUG---UGGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 51056 | 0.66 | 0.968662 |
Target: 5'- aCGACUAu-CGAUCGcuugccgauuugcccGUGcGCACCGcGCu -3' miRNA: 3'- -GCUGGUuuGCUAGC---------------UACuUGUGGC-CG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 25720 | 0.66 | 0.963772 |
Target: 5'- gCGGCCAGcucgGCGAUCGGcUGccCGCC-GCa -3' miRNA: 3'- -GCUGGUU----UGCUAGCU-ACuuGUGGcCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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