miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22716 3' -59.8 NC_005091.1 + 8507 0.66 0.473956
Target:  5'- gGCGCACGCGUucgagCAUCcgggcUGCGGC-CCGg -3'
miRNA:   3'- aUGCGUGCGCG-----GUAGc----ACGUCGcGGU- -5'
22716 3' -59.8 NC_005091.1 + 33140 0.66 0.470983
Target:  5'- uUGCGUGCGCuggaccuucaugaaGUCGUCGUGUucgAGCGCg- -3'
miRNA:   3'- -AUGCGUGCG--------------CGGUAGCACG---UCGCGgu -5'
22716 3' -59.8 NC_005091.1 + 16577 0.66 0.464083
Target:  5'- gUGCGUACcccaCGCCGUCGcucGguGCGUCGg -3'
miRNA:   3'- -AUGCGUGc---GCGGUAGCa--CguCGCGGU- -5'
22716 3' -59.8 NC_005091.1 + 21193 0.66 0.454318
Target:  5'- aACGCucgACGCGCUcgugAUCGauucuagaauUGCAGCGCa- -3'
miRNA:   3'- aUGCG---UGCGCGG----UAGC----------ACGUCGCGgu -5'
22716 3' -59.8 NC_005091.1 + 45701 0.66 0.444665
Target:  5'- -cUGUACGCGUCGgccgCGcGCcGCGCCGg -3'
miRNA:   3'- auGCGUGCGCGGUa---GCaCGuCGCGGU- -5'
22716 3' -59.8 NC_005091.1 + 43549 0.66 0.444665
Target:  5'- --aGCcugUGCGCCAUCGcGagaAGCGCCGg -3'
miRNA:   3'- augCGu--GCGCGGUAGCaCg--UCGCGGU- -5'
22716 3' -59.8 NC_005091.1 + 53741 0.66 0.441792
Target:  5'- aGCGCaACGCGUaccCGUGCGgcgaguauuaccauGCGCCGa -3'
miRNA:   3'- aUGCG-UGCGCGguaGCACGU--------------CGCGGU- -5'
22716 3' -59.8 NC_005091.1 + 37158 0.66 0.436077
Target:  5'- cACGUACGCGCCcggcguguucagcuuUCGguacuugGCGGCgGCCu -3'
miRNA:   3'- aUGCGUGCGCGGu--------------AGCa------CGUCG-CGGu -5'
22716 3' -59.8 NC_005091.1 + 49363 0.66 0.435129
Target:  5'- gGCGCACgcccgacgaacuGCGCC-UCGUGUGGCuGCaCGa -3'
miRNA:   3'- aUGCGUG------------CGCGGuAGCACGUCG-CG-GU- -5'
22716 3' -59.8 NC_005091.1 + 54203 0.66 0.435129
Target:  5'- gAUGC-CGCGCUAU-GUGCaAGCGCa- -3'
miRNA:   3'- aUGCGuGCGCGGUAgCACG-UCGCGgu -5'
22716 3' -59.8 NC_005091.1 + 11419 0.67 0.416417
Target:  5'- gACGCACauGCGCaGUCGaacGCGGCaGCCGc -3'
miRNA:   3'- aUGCGUG--CGCGgUAGCa--CGUCG-CGGU- -5'
22716 3' -59.8 NC_005091.1 + 17913 0.67 0.407247
Target:  5'- cACGaUACGuCGCCucgGUCGUGCGGUagacgGCCGg -3'
miRNA:   3'- aUGC-GUGC-GCGG---UAGCACGUCG-----CGGU- -5'
22716 3' -59.8 NC_005091.1 + 47354 0.67 0.398205
Target:  5'- gACGCGC-UGCCGcUCGUGCGgaacgacacGCGCUAc -3'
miRNA:   3'- aUGCGUGcGCGGU-AGCACGU---------CGCGGU- -5'
22716 3' -59.8 NC_005091.1 + 53548 0.67 0.398205
Target:  5'- gAUGCACGCGCCuucuaccucGUCGcaccauUGCcAGCGCa- -3'
miRNA:   3'- aUGCGUGCGCGG---------UAGC------ACG-UCGCGgu -5'
22716 3' -59.8 NC_005091.1 + 52691 0.67 0.380512
Target:  5'- cGCGCACGCcgGCCAgugCGacgGCuuuGCGCUg -3'
miRNA:   3'- aUGCGUGCG--CGGUa--GCa--CGu--CGCGGu -5'
22716 3' -59.8 NC_005091.1 + 23497 0.67 0.371865
Target:  5'- gACGCGCGCGgCGauggcgcugcUCGgucuguucgGCGGCGCUg -3'
miRNA:   3'- aUGCGUGCGCgGU----------AGCa--------CGUCGCGGu -5'
22716 3' -59.8 NC_005091.1 + 29270 0.67 0.371865
Target:  5'- gACaGCuucguCGCGCCAUccgucgCGUGCAGCGUUu -3'
miRNA:   3'- aUG-CGu----GCGCGGUA------GCACGUCGCGGu -5'
22716 3' -59.8 NC_005091.1 + 10907 0.68 0.363353
Target:  5'- cGCGUACGgGUCGUCGcugccgagUGCAaugcGCGCCu -3'
miRNA:   3'- aUGCGUGCgCGGUAGC--------ACGU----CGCGGu -5'
22716 3' -59.8 NC_005091.1 + 57801 0.68 0.354977
Target:  5'- --aGCACGCGgaCGaucUCGUGCAG-GCCAu -3'
miRNA:   3'- augCGUGCGCg-GU---AGCACGUCgCGGU- -5'
22716 3' -59.8 NC_005091.1 + 407 0.68 0.354977
Target:  5'- --aGCACGCGgaCGaucUCGUGCAG-GCCAu -3'
miRNA:   3'- augCGUGCGCg-GU---AGCACGUCgCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.