miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22716 3' -59.8 NC_005091.1 + 53741 0.66 0.441792
Target:  5'- aGCGCaACGCGUaccCGUGCGgcgaguauuaccauGCGCCGa -3'
miRNA:   3'- aUGCG-UGCGCGguaGCACGU--------------CGCGGU- -5'
22716 3' -59.8 NC_005091.1 + 8948 0.71 0.216248
Target:  5'- gGCGUACGaCGuUCAUCGccagcgcaGCAGCGCCAa -3'
miRNA:   3'- aUGCGUGC-GC-GGUAGCa-------CGUCGCGGU- -5'
22716 3' -59.8 NC_005091.1 + 6516 0.71 0.205276
Target:  5'- cGCGCACGCuGCCcUCG-GgAGCGUCGa -3'
miRNA:   3'- aUGCGUGCG-CGGuAGCaCgUCGCGGU- -5'
22716 3' -59.8 NC_005091.1 + 48810 0.75 0.106429
Target:  5'- aACGCAUG-GCCGuaucuccgugucgcUCGUGCAGUGCCGc -3'
miRNA:   3'- aUGCGUGCgCGGU--------------AGCACGUCGCGGU- -5'
22716 3' -59.8 NC_005091.1 + 23497 0.67 0.371865
Target:  5'- gACGCGCGCGgCGauggcgcugcUCGgucuguucgGCGGCGCUg -3'
miRNA:   3'- aUGCGUGCGCgGU----------AGCa--------CGUCGCGGu -5'
22716 3' -59.8 NC_005091.1 + 10907 0.68 0.363353
Target:  5'- cGCGUACGgGUCGUCGcugccgagUGCAaugcGCGCCu -3'
miRNA:   3'- aUGCGUGCgCGGUAGC--------ACGU----CGCGGu -5'
22716 3' -59.8 NC_005091.1 + 57801 0.68 0.354977
Target:  5'- --aGCACGCGgaCGaucUCGUGCAG-GCCAu -3'
miRNA:   3'- augCGUGCGCg-GU---AGCACGUCgCGGU- -5'
22716 3' -59.8 NC_005091.1 + 26437 0.68 0.354146
Target:  5'- cGCGCGCGggccgccggggcUGCCAUCGUaGCGGCcgggcgcgagcagGCCGc -3'
miRNA:   3'- aUGCGUGC------------GCGGUAGCA-CGUCG-------------CGGU- -5'
22716 3' -59.8 NC_005091.1 + 52638 0.68 0.322848
Target:  5'- gUGCGU-CGCGCCGauccCGUGU-GCGCCAu -3'
miRNA:   3'- -AUGCGuGCGCGGUa---GCACGuCGCGGU- -5'
22716 3' -59.8 NC_005091.1 + 22840 0.69 0.278816
Target:  5'- aGCGCACGCGCCugaacGCcGCGCUg -3'
miRNA:   3'- aUGCGUGCGCGGuagcaCGuCGCGGu -5'
22716 3' -59.8 NC_005091.1 + 55994 0.68 0.322848
Target:  5'- cUGCGCACGCaGuUgGUCGgccUGCuGCGCCAu -3'
miRNA:   3'- -AUGCGUGCG-C-GgUAGC---ACGuCGCGGU- -5'
22716 3' -59.8 NC_005091.1 + 49363 0.66 0.435129
Target:  5'- gGCGCACgcccgacgaacuGCGCC-UCGUGUGGCuGCaCGa -3'
miRNA:   3'- aUGCGUG------------CGCGGuAGCACGUCG-CG-GU- -5'
22716 3' -59.8 NC_005091.1 + 10254 0.7 0.252204
Target:  5'- cGCGCaggcaggacACGCGCaCAUCaggaaGUGCGGCGCUc -3'
miRNA:   3'- aUGCG---------UGCGCG-GUAG-----CACGUCGCGGu -5'
22716 3' -59.8 NC_005091.1 + 54203 0.66 0.435129
Target:  5'- gAUGC-CGCGCUAU-GUGCaAGCGCa- -3'
miRNA:   3'- aUGCGuGCGCGGUAgCACG-UCGCGgu -5'
22716 3' -59.8 NC_005091.1 + 31626 0.68 0.330673
Target:  5'- -cCGCACGC-UCGUCGcUGUaacgAGCGCCAg -3'
miRNA:   3'- auGCGUGCGcGGUAGC-ACG----UCGCGGU- -5'
22716 3' -59.8 NC_005091.1 + 36506 0.71 0.227719
Target:  5'- gUGCGCAUggaaGCGCCGUgcUGCGGCgGCCGg -3'
miRNA:   3'- -AUGCGUG----CGCGGUAgcACGUCG-CGGU- -5'
22716 3' -59.8 NC_005091.1 + 50817 0.73 0.157412
Target:  5'- aGCGUGCG-GCCGUCGUGC-GCGCg- -3'
miRNA:   3'- aUGCGUGCgCGGUAGCACGuCGCGgu -5'
22716 3' -59.8 NC_005091.1 + 11419 0.67 0.416417
Target:  5'- gACGCACauGCGCaGUCGaacGCGGCaGCCGc -3'
miRNA:   3'- aUGCGUG--CGCGgUAGCa--CGUCG-CGGU- -5'
22716 3' -59.8 NC_005091.1 + 407 0.68 0.354977
Target:  5'- --aGCACGCGgaCGaucUCGUGCAG-GCCAu -3'
miRNA:   3'- augCGUGCGCg-GU---AGCACGUCgCGGU- -5'
22716 3' -59.8 NC_005091.1 + 46269 0.69 0.315163
Target:  5'- cGCGCuCGUgGCCGUCGUacuggugaaaCAGCGCCAu -3'
miRNA:   3'- aUGCGuGCG-CGGUAGCAc---------GUCGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.