Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2272 | 3' | -55.9 | NC_001405.1 | + | 1436 | 0.66 | 0.583817 |
Target: 5'- uGCCGuGaGAGUU--GGUGGgCGUCGCCa -3' miRNA: 3'- -CGGC-CaUUCAGauUCGUCgGCGGCGG- -5' |
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2272 | 3' | -55.9 | NC_001405.1 | + | 17633 | 0.66 | 0.582697 |
Target: 5'- aGCCGGUcuuuguGGUUcuuGCAGauauggcccucacCUGCCGCCu -3' miRNA: 3'- -CGGCCAu-----UCAGauuCGUC-------------GGCGGCGG- -5' |
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2272 | 3' | -55.9 | NC_001405.1 | + | 16386 | 0.66 | 0.572638 |
Target: 5'- gGCCGcGgcug-CUGcGGCGGCCGCuCGUCg -3' miRNA: 3'- -CGGC-CauucaGAU-UCGUCGGCG-GCGG- -5' |
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2272 | 3' | -55.9 | NC_001405.1 | + | 10909 | 0.66 | 0.572638 |
Target: 5'- cCCGGUucGAGUCUcGGGcCGGCCGgaCUGCg -3' miRNA: 3'- cGGCCA--UUCAGA-UUC-GUCGGC--GGCGg -5' |
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2272 | 3' | -55.9 | NC_001405.1 | + | 11539 | 0.66 | 0.56151 |
Target: 5'- -gCGGUuaccAGGUC--GGCGGCCGCCa-- -3' miRNA: 3'- cgGCCA----UUCAGauUCGUCGGCGGcgg -5' |
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2272 | 3' | -55.9 | NC_001405.1 | + | 15142 | 0.66 | 0.56151 |
Target: 5'- uGCCGcGUugGAGUUcucuUccGC-GCCGCUGCCa -3' miRNA: 3'- -CGGC-CA--UUCAG----AuuCGuCGGCGGCGG- -5' |
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2272 | 3' | -55.9 | NC_001405.1 | + | 18775 | 0.66 | 0.56151 |
Target: 5'- cGCCGccaGAGgagcugCUGAGCcGCCGUgCGCCc -3' miRNA: 3'- -CGGCca-UUCa-----GAUUCGuCGGCG-GCGG- -5' |
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2272 | 3' | -55.9 | NC_001405.1 | + | 27915 | 0.66 | 0.550442 |
Target: 5'- aCUGGUcauucAGUC---GUAGCCGuCCGCCg -3' miRNA: 3'- cGGCCAu----UCAGauuCGUCGGC-GGCGG- -5' |
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2272 | 3' | -55.9 | NC_001405.1 | + | 13243 | 0.66 | 0.543833 |
Target: 5'- cGCCGGUuGGUCagcAGGUAGUUcaggguugccuccagGCUGCCc -3' miRNA: 3'- -CGGCCAuUCAGa--UUCGUCGG---------------CGGCGG- -5' |
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2272 | 3' | -55.9 | NC_001405.1 | + | 33197 | 0.66 | 0.532877 |
Target: 5'- gGgCGGU-GGUgCUGcagcAGCGcgcgaauaaacugcuGCCGCCGCCg -3' miRNA: 3'- -CgGCCAuUCA-GAU----UCGU---------------CGGCGGCGG- -5' |
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2272 | 3' | -55.9 | NC_001405.1 | + | 9547 | 0.67 | 0.517675 |
Target: 5'- cCCGGUuauGGGUUggcGGGgGGCUGCCGUg -3' miRNA: 3'- cGGCCA---UUCAGa--UUCgUCGGCGGCGg -5' |
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2272 | 3' | -55.9 | NC_001405.1 | + | 4943 | 0.67 | 0.485713 |
Target: 5'- aCUGGU-AGUUaagagagcuGCAGCUGCCGUCa -3' miRNA: 3'- cGGCCAuUCAGauu------CGUCGGCGGCGG- -5' |
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2272 | 3' | -55.9 | NC_001405.1 | + | 27313 | 0.67 | 0.485713 |
Target: 5'- uUCGGguugaguAGUCuUGGGCAGCUccaGCCGCa -3' miRNA: 3'- cGGCCau-----UCAG-AUUCGUCGG---CGGCGg -5' |
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2272 | 3' | -55.9 | NC_001405.1 | + | 8616 | 0.68 | 0.454721 |
Target: 5'- cGCCGGgagAGGgggcagGGGCAcGUCGgCGCCg -3' miRNA: 3'- -CGGCCa--UUCaga---UUCGU-CGGCgGCGG- -5' |
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2272 | 3' | -55.9 | NC_001405.1 | + | 23617 | 0.68 | 0.454721 |
Target: 5'- aCUGGgucGUCUucauuCAGCCGCCGCa -3' miRNA: 3'- cGGCCauuCAGAuuc--GUCGGCGGCGg -5' |
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2272 | 3' | -55.9 | NC_001405.1 | + | 31261 | 0.68 | 0.434665 |
Target: 5'- uCCGGccuuGUCUAGGguaAGaCCGCUGCCc -3' miRNA: 3'- cGGCCauu-CAGAUUCg--UC-GGCGGCGG- -5' |
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2272 | 3' | -55.9 | NC_001405.1 | + | 12391 | 0.68 | 0.424831 |
Target: 5'- gGCCGGacGGcuggCUcuGCAG-CGCCGCCc -3' miRNA: 3'- -CGGCCauUCa---GAuuCGUCgGCGGCGG- -5' |
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2272 | 3' | -55.9 | NC_001405.1 | + | 10539 | 0.68 | 0.415131 |
Target: 5'- gGCCGGUGAGgcgugcGCAGUCGUugaCGCUc -3' miRNA: 3'- -CGGCCAUUCagauu-CGUCGGCG---GCGG- -5' |
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2272 | 3' | -55.9 | NC_001405.1 | + | 11452 | 0.69 | 0.39521 |
Target: 5'- aCCGGgauuAGUCccGcgcgcgcacacguGGCGGCCGCCGaCCu -3' miRNA: 3'- cGGCCau--UCAGa-U-------------UCGUCGGCGGC-GG- -5' |
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2272 | 3' | -55.9 | NC_001405.1 | + | 35551 | 0.69 | 0.368737 |
Target: 5'- aCUGGUAAGgCUGAcuGUuauGGCUGCCGCUg -3' miRNA: 3'- cGGCCAUUCaGAUU--CG---UCGGCGGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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