Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22721 | 5' | -52.3 | NC_005091.1 | + | 13108 | 0.66 | 0.879635 |
Target: 5'- aAAGAU--AGCUCGGucuggaucgacaucuACGAGCCGuGGCu -3' miRNA: 3'- gUUUUAcuUCGGGCC---------------UGCUUGGC-CCG- -5' |
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22721 | 5' | -52.3 | NC_005091.1 | + | 17740 | 0.66 | 0.876527 |
Target: 5'- -----cGAGGauaCCGaccucauCGAGCCGGGCa -3' miRNA: 3'- guuuuaCUUCg--GGCcu-----GCUUGGCCCG- -5' |
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22721 | 5' | -52.3 | NC_005091.1 | + | 30729 | 0.66 | 0.868576 |
Target: 5'- -----cGAcguGGUCgGGACGGGuCCGGGUc -3' miRNA: 3'- guuuuaCU---UCGGgCCUGCUU-GGCCCG- -5' |
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22721 | 5' | -52.3 | NC_005091.1 | + | 30483 | 0.66 | 0.860373 |
Target: 5'- gCGGAagGAAGCguUCGGcUGGGCCGGGa -3' miRNA: 3'- -GUUUuaCUUCG--GGCCuGCUUGGCCCg -5' |
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22721 | 5' | -52.3 | NC_005091.1 | + | 29485 | 0.66 | 0.860373 |
Target: 5'- ---cGUGGucaAGCCCGGACGcACCaaGCa -3' miRNA: 3'- guuuUACU---UCGGGCCUGCuUGGccCG- -5' |
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22721 | 5' | -52.3 | NC_005091.1 | + | 6023 | 0.67 | 0.851926 |
Target: 5'- aCGAGGgc-GGCgCGGACGu-UCGGGCg -3' miRNA: 3'- -GUUUUacuUCGgGCCUGCuuGGCCCG- -5' |
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22721 | 5' | -52.3 | NC_005091.1 | + | 33966 | 0.67 | 0.851926 |
Target: 5'- ----cUGAAGCC--GAUGGguacGCCGGGCg -3' miRNA: 3'- guuuuACUUCGGgcCUGCU----UGGCCCG- -5' |
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22721 | 5' | -52.3 | NC_005091.1 | + | 51871 | 0.67 | 0.851926 |
Target: 5'- --------cGCCCGGAC--GCCGGGa -3' miRNA: 3'- guuuuacuuCGGGCCUGcuUGGCCCg -5' |
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22721 | 5' | -52.3 | NC_005091.1 | + | 10060 | 0.67 | 0.851069 |
Target: 5'- -cAGGUGcuuGGCugaCCGGACGAggaucgaGCCGGGg -3' miRNA: 3'- guUUUACu--UCG---GGCCUGCU-------UGGCCCg -5' |
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22721 | 5' | -52.3 | NC_005091.1 | + | 14123 | 0.67 | 0.825205 |
Target: 5'- -----aGuAGCCgGGAgGucGCCGGGCu -3' miRNA: 3'- guuuuaCuUCGGgCCUgCu-UGGCCCG- -5' |
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22721 | 5' | -52.3 | NC_005091.1 | + | 10010 | 0.67 | 0.821495 |
Target: 5'- uCGAAcUGGAaCCCGGcacgacgGCGAccacguuguucaucGCCGGGCg -3' miRNA: 3'- -GUUUuACUUcGGGCC-------UGCU--------------UGGCCCG- -5' |
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22721 | 5' | -52.3 | NC_005091.1 | + | 16753 | 0.68 | 0.806334 |
Target: 5'- -----cGAAGCUCGGGUGGACCGcuuucagcGGCu -3' miRNA: 3'- guuuuaCUUCGGGCCUGCUUGGC--------CCG- -5' |
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22721 | 5' | -52.3 | NC_005091.1 | + | 44432 | 0.68 | 0.796613 |
Target: 5'- -----aGAGGCCgGGaACGcuuGCCGGuGCa -3' miRNA: 3'- guuuuaCUUCGGgCC-UGCu--UGGCC-CG- -5' |
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22721 | 5' | -52.3 | NC_005091.1 | + | 21042 | 0.68 | 0.786716 |
Target: 5'- uCGAcGUGuuGCuuGGugGAAaagCGGGCu -3' miRNA: 3'- -GUUuUACuuCGggCCugCUUg--GCCCG- -5' |
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22721 | 5' | -52.3 | NC_005091.1 | + | 52425 | 0.68 | 0.786716 |
Target: 5'- gCAAGcAUGGuuAGCUCcaguggaaucaGGGCGcGCCGGGCg -3' miRNA: 3'- -GUUU-UACU--UCGGG-----------CCUGCuUGGCCCG- -5' |
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22721 | 5' | -52.3 | NC_005091.1 | + | 41215 | 0.68 | 0.775639 |
Target: 5'- uCAAGA--AGGUCCucgccgaacacaaGGACGAACCGGuGCu -3' miRNA: 3'- -GUUUUacUUCGGG-------------CCUGCUUGGCC-CG- -5' |
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22721 | 5' | -52.3 | NC_005091.1 | + | 9771 | 0.68 | 0.770542 |
Target: 5'- ----cUGAAGgCCCGGuCGAugagucgcuggcccaGCCGGGa -3' miRNA: 3'- guuuuACUUC-GGGCCuGCU---------------UGGCCCg -5' |
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22721 | 5' | -52.3 | NC_005091.1 | + | 6606 | 0.69 | 0.756081 |
Target: 5'- gCGGAuUGAGGCCaggcacgaugUGGAuCGAGUCGGGCg -3' miRNA: 3'- -GUUUuACUUCGG----------GCCU-GCUUGGCCCG- -5' |
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22721 | 5' | -52.3 | NC_005091.1 | + | 10914 | 0.69 | 0.745595 |
Target: 5'- gCAAAAaGAAGCCCcGGCGGaaACCcgucgGGGCc -3' miRNA: 3'- -GUUUUaCUUCGGGcCUGCU--UGG-----CCCG- -5' |
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22721 | 5' | -52.3 | NC_005091.1 | + | 29545 | 0.69 | 0.745595 |
Target: 5'- --------cGCCCGGuucgcCGAACCGGGa -3' miRNA: 3'- guuuuacuuCGGGCCu----GCUUGGCCCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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