miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22725 3' -40.6 NC_005091.1 + 56098 0.66 1
Target:  5'- aGCGCg--GGCGGGAGGuCGGcc-GGCg -3'
miRNA:   3'- -CGCGauaCUGCCUUUUuGCUuuuUUG- -5'
22725 3' -40.6 NC_005091.1 + 41033 0.66 1
Target:  5'- aGCGCUG-GGCGGGAc-GCGGu----- -3'
miRNA:   3'- -CGCGAUaCUGCCUUuuUGCUuuuuug -5'
22725 3' -40.6 NC_005091.1 + 6456 0.66 1
Target:  5'- cGCGCUGcgcUGAaGGAAGcaggcgcGACGGAuggcGAACg -3'
miRNA:   3'- -CGCGAU---ACUgCCUUU-------UUGCUUu---UUUG- -5'
22725 3' -40.6 NC_005091.1 + 1014 0.66 1
Target:  5'- cGCGCUGcucGGCGucAAuACGAcgGAACg -3'
miRNA:   3'- -CGCGAUa--CUGCcuUUuUGCUuuUUUG- -5'
22725 3' -40.6 NC_005091.1 + 27415 0.66 1
Target:  5'- gGCGCUccGGgGGAuc-ACGAAAGGc- -3'
miRNA:   3'- -CGCGAuaCUgCCUuuuUGCUUUUUug -5'
22725 3' -40.6 NC_005091.1 + 33750 0.66 1
Target:  5'- aCGCUGUGGCuGGAAGAggcuaucGCGGc----- -3'
miRNA:   3'- cGCGAUACUG-CCUUUU-------UGCUuuuuug -5'
22725 3' -40.6 NC_005091.1 + 45317 0.66 1
Target:  5'- cGCGCg--GcCGGu-AGACGAcAGAGCg -3'
miRNA:   3'- -CGCGauaCuGCCuuUUUGCUuUUUUG- -5'
22725 3' -40.6 NC_005091.1 + 40981 0.67 0.999999
Target:  5'- aGCGCUcgaaccgGACGGcGAcAACGAcuGGGCg -3'
miRNA:   3'- -CGCGAua-----CUGCC-UUuUUGCUuuUUUG- -5'
22725 3' -40.6 NC_005091.1 + 35939 0.66 0.999999
Target:  5'- cGCGCUgcgacuugAUGACGuuGAAGCGGuccacGACa -3'
miRNA:   3'- -CGCGA--------UACUGCcuUUUUGCUuuu--UUG- -5'
22725 3' -40.6 NC_005091.1 + 1712 0.66 0.999999
Target:  5'- aGCGCgucaaaGGGuuacuugccGAAGCGAAGGAGCa -3'
miRNA:   3'- -CGCGauacugCCU---------UUUUGCUUUUUUG- -5'
22725 3' -40.6 NC_005091.1 + 37123 0.66 0.999999
Target:  5'- gGCGCaGUG-CGGGAAGACuGAu--GGCc -3'
miRNA:   3'- -CGCGaUACuGCCUUUUUG-CUuuuUUG- -5'
22725 3' -40.6 NC_005091.1 + 51218 0.66 0.999999
Target:  5'- cGCGCgucgcUGugGGAAGcAACGAu----- -3'
miRNA:   3'- -CGCGau---ACugCCUUU-UUGCUuuuuug -5'
22725 3' -40.6 NC_005091.1 + 49292 0.67 0.999999
Target:  5'- cGCGUgcUGACGGggGA--GAAGccGCa -3'
miRNA:   3'- -CGCGauACUGCCuuUUugCUUUuuUG- -5'
22725 3' -40.6 NC_005091.1 + 4822 0.67 0.999999
Target:  5'- cGCGCUcgGcGCGGcgGcAACGGucAAGCg -3'
miRNA:   3'- -CGCGAuaC-UGCCuuU-UUGCUuuUUUG- -5'
22725 3' -40.6 NC_005091.1 + 25240 0.67 0.999998
Target:  5'- uCGCUAUGGCGGcgGucgguGCGuccGGGGCg -3'
miRNA:   3'- cGCGAUACUGCCuuUu----UGCuu-UUUUG- -5'
22725 3' -40.6 NC_005091.1 + 52352 0.67 0.999997
Target:  5'- gGCGagcagGACGGAAu--CGAGAuGACg -3'
miRNA:   3'- -CGCgaua-CUGCCUUuuuGCUUUuUUG- -5'
22725 3' -40.6 NC_005091.1 + 29361 0.67 0.999997
Target:  5'- aCGCUGcacgcGACGGAuggcGCGAcGAAGCu -3'
miRNA:   3'- cGCGAUa----CUGCCUuuu-UGCUuUUUUG- -5'
22725 3' -40.6 NC_005091.1 + 6885 0.67 0.999996
Target:  5'- cGCGCa---GCGGAAGcgggcgcGACGAAGAAAg -3'
miRNA:   3'- -CGCGauacUGCCUUU-------UUGCUUUUUUg -5'
22725 3' -40.6 NC_005091.1 + 3552 0.68 0.999989
Target:  5'- aCGCcGUGACGGAc--GCGAAccuGCg -3'
miRNA:   3'- cGCGaUACUGCCUuuuUGCUUuuuUG- -5'
22725 3' -40.6 NC_005091.1 + 51580 0.68 0.999989
Target:  5'- cGUGCgucgcGUGACGGGc--GCGcAGAAGCg -3'
miRNA:   3'- -CGCGa----UACUGCCUuuuUGCuUUUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.