Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22725 | 3' | -40.6 | NC_005091.1 | + | 58032 | 0.71 | 0.999227 |
Target: 5'- cGCGCUGaacGCGGAGAAuCGAccGGGCa -3' miRNA: 3'- -CGCGAUac-UGCCUUUUuGCUuuUUUG- -5' |
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22725 | 3' | -40.6 | NC_005091.1 | + | 57161 | 0.69 | 0.999954 |
Target: 5'- -gGCUGaGAUGGAAugGGGCGGcGAAGACg -3' miRNA: 3'- cgCGAUaCUGCCUU--UUUGCU-UUUUUG- -5' |
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22725 | 3' | -40.6 | NC_005091.1 | + | 56098 | 0.66 | 1 |
Target: 5'- aGCGCg--GGCGGGAGGuCGGcc-GGCg -3' miRNA: 3'- -CGCGauaCUGCCUUUUuGCUuuuUUG- -5' |
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22725 | 3' | -40.6 | NC_005091.1 | + | 53272 | 0.73 | 0.997692 |
Target: 5'- cCGUaaAUGGCGGAAAGGCGAAAc--- -3' miRNA: 3'- cGCGa-UACUGCCUUUUUGCUUUuuug -5' |
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22725 | 3' | -40.6 | NC_005091.1 | + | 53234 | 0.74 | 0.993102 |
Target: 5'- cGCGCUAcaGCGGAAucacGCGAGAcAGCg -3' miRNA: 3'- -CGCGAUacUGCCUUuu--UGCUUUuUUG- -5' |
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22725 | 3' | -40.6 | NC_005091.1 | + | 52352 | 0.67 | 0.999997 |
Target: 5'- gGCGagcagGACGGAAu--CGAGAuGACg -3' miRNA: 3'- -CGCgaua-CUGCCUUuuuGCUUUuUUG- -5' |
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22725 | 3' | -40.6 | NC_005091.1 | + | 51580 | 0.68 | 0.999989 |
Target: 5'- cGUGCgucgcGUGACGGGc--GCGcAGAAGCg -3' miRNA: 3'- -CGCGa----UACUGCCUuuuUGCuUUUUUG- -5' |
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22725 | 3' | -40.6 | NC_005091.1 | + | 51218 | 0.66 | 0.999999 |
Target: 5'- cGCGCgucgcUGugGGAAGcAACGAu----- -3' miRNA: 3'- -CGCGau---ACugCCUUU-UUGCUuuuuug -5' |
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22725 | 3' | -40.6 | NC_005091.1 | + | 49292 | 0.67 | 0.999999 |
Target: 5'- cGCGUgcUGACGGggGA--GAAGccGCa -3' miRNA: 3'- -CGCGauACUGCCuuUUugCUUUuuUG- -5' |
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22725 | 3' | -40.6 | NC_005091.1 | + | 48583 | 0.78 | 0.951546 |
Target: 5'- gGCGCgaAUGGCGGGAGGGCGc-AGAGCc -3' miRNA: 3'- -CGCGa-UACUGCCUUUUUGCuuUUUUG- -5' |
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22725 | 3' | -40.6 | NC_005091.1 | + | 48577 | 0.68 | 0.999989 |
Target: 5'- cGCGCcagccaGUGAcaCGGAGAcACGAucAAACg -3' miRNA: 3'- -CGCGa-----UACU--GCCUUUuUGCUuuUUUG- -5' |
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22725 | 3' | -40.6 | NC_005091.1 | + | 48462 | 1.16 | 0.016511 |
Target: 5'- gGCGCUAUGACGGAAAAACGAAAAAACg -3' miRNA: 3'- -CGCGAUACUGCCUUUUUGCUUUUUUG- -5' |
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22725 | 3' | -40.6 | NC_005091.1 | + | 45317 | 0.66 | 1 |
Target: 5'- cGCGCg--GcCGGu-AGACGAcAGAGCg -3' miRNA: 3'- -CGCGauaCuGCCuuUUUGCUuUUUUG- -5' |
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22725 | 3' | -40.6 | NC_005091.1 | + | 45104 | 0.77 | 0.964689 |
Target: 5'- uGCGCUGUcGcCGGAAGAGC-AGGAAACc -3' miRNA: 3'- -CGCGAUA-CuGCCUUUUUGcUUUUUUG- -5' |
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22725 | 3' | -40.6 | NC_005091.1 | + | 41033 | 0.66 | 1 |
Target: 5'- aGCGCUG-GGCGGGAc-GCGGu----- -3' miRNA: 3'- -CGCGAUaCUGCCUUuuUGCUuuuuug -5' |
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22725 | 3' | -40.6 | NC_005091.1 | + | 40981 | 0.67 | 0.999999 |
Target: 5'- aGCGCUcgaaccgGACGGcGAcAACGAcuGGGCg -3' miRNA: 3'- -CGCGAua-----CUGCC-UUuUUGCUuuUUUG- -5' |
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22725 | 3' | -40.6 | NC_005091.1 | + | 40979 | 0.73 | 0.997645 |
Target: 5'- uGCGCUGcgcgccuccgaacUGAagGGGAAAACGGAGAcGCc -3' miRNA: 3'- -CGCGAU-------------ACUg-CCUUUUUGCUUUUuUG- -5' |
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22725 | 3' | -40.6 | NC_005091.1 | + | 37123 | 0.66 | 0.999999 |
Target: 5'- gGCGCaGUG-CGGGAAGACuGAu--GGCc -3' miRNA: 3'- -CGCGaUACuGCCUUUUUG-CUuuuUUG- -5' |
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22725 | 3' | -40.6 | NC_005091.1 | + | 36490 | 0.69 | 0.999912 |
Target: 5'- cGUGCUGcGGCGGccggaucGAAGCGGAucAGCg -3' miRNA: 3'- -CGCGAUaCUGCCu------UUUUGCUUuuUUG- -5' |
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22725 | 3' | -40.6 | NC_005091.1 | + | 35939 | 0.66 | 0.999999 |
Target: 5'- cGCGCUgcgacuugAUGACGuuGAAGCGGuccacGACa -3' miRNA: 3'- -CGCGA--------UACUGCcuUUUUGCUuuu--UUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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