miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22729 3' -54.3 NC_005091.1 + 30796 0.66 0.807464
Target:  5'- cCGU-CGuCCAGUCGCGaGCGGuugaaguCGGACGu -3'
miRNA:   3'- -GUAcGC-GGUCAGUGC-CGCUu------GCUUGC- -5'
22729 3' -54.3 NC_005091.1 + 57425 0.66 0.797897
Target:  5'- gCAUGCGCgAGUCG-GGCGuuccuaucAugGGGCu -3'
miRNA:   3'- -GUACGCGgUCAGUgCCGC--------UugCUUGc -5'
22729 3' -54.3 NC_005091.1 + 53066 0.66 0.797897
Target:  5'- gAUGCGCCccguaaccguuGGUCgcgagcauuGCGGCGAcCGuuuGCGg -3'
miRNA:   3'- gUACGCGG-----------UCAG---------UGCCGCUuGCu--UGC- -5'
22729 3' -54.3 NC_005091.1 + 31 0.66 0.797897
Target:  5'- gCAUGCGCgAGUCG-GGCGuuccuaucAugGGGCu -3'
miRNA:   3'- -GUACGCGgUCAGUgCCGC--------UugCUUGc -5'
22729 3' -54.3 NC_005091.1 + 29464 0.66 0.797897
Target:  5'- -cUGUcCCGGUU-CGGCGAaccggGCGAGCGa -3'
miRNA:   3'- guACGcGGUCAGuGCCGCU-----UGCUUGC- -5'
22729 3' -54.3 NC_005091.1 + 7533 0.66 0.788157
Target:  5'- aAU-CGCCGGUCggcACGGCGGAaGGGCu -3'
miRNA:   3'- gUAcGCGGUCAG---UGCCGCUUgCUUGc -5'
22729 3' -54.3 NC_005091.1 + 35229 0.66 0.778255
Target:  5'- ---aCGCCAG-CGCGGCG-GCGAuuuucGCGa -3'
miRNA:   3'- guacGCGGUCaGUGCCGCuUGCU-----UGC- -5'
22729 3' -54.3 NC_005091.1 + 19399 0.66 0.797897
Target:  5'- gCAUGUGCgAG-CGCGGCGcuCGGGa- -3'
miRNA:   3'- -GUACGCGgUCaGUGCCGCuuGCUUgc -5'
22729 3' -54.3 NC_005091.1 + 52121 0.66 0.807464
Target:  5'- cCGU-CGCCGGcgCGgGGCGcguuGCGGACGa -3'
miRNA:   3'- -GUAcGCGGUCa-GUgCCGCu---UGCUUGC- -5'
22729 3' -54.3 NC_005091.1 + 17875 0.66 0.797897
Target:  5'- -cUGUGCgAGaUCGgcCGGCGAcaacugGCGAACGa -3'
miRNA:   3'- guACGCGgUC-AGU--GCCGCU------UGCUUGC- -5'
22729 3' -54.3 NC_005091.1 + 57221 0.67 0.747689
Target:  5'- ----aGCCAGUCggGCGGCGAgucGCGGAa- -3'
miRNA:   3'- guacgCGGUCAG--UGCCGCU---UGCUUgc -5'
22729 3' -54.3 NC_005091.1 + 3625 0.67 0.737251
Target:  5'- --cGCGUCcGUCACGGCGuGCaGGAuCGg -3'
miRNA:   3'- guaCGCGGuCAGUGCCGCuUG-CUU-GC- -5'
22729 3' -54.3 NC_005091.1 + 51646 0.67 0.70535
Target:  5'- --aGCGgcuuuCCAGuUCGCGGCcauucGGGCGAGCGa -3'
miRNA:   3'- guaCGC-----GGUC-AGUGCCG-----CUUGCUUGC- -5'
22729 3' -54.3 NC_005091.1 + 31542 0.67 0.747689
Target:  5'- --gGCGCUcGUUACaGCG-ACGAGCGu -3'
miRNA:   3'- guaCGCGGuCAGUGcCGCuUGCUUGC- -5'
22729 3' -54.3 NC_005091.1 + 36306 0.67 0.747689
Target:  5'- aAUGCGCgAgcGUCGCGGCGuGCcGACc -3'
miRNA:   3'- gUACGCGgU--CAGUGCCGCuUGcUUGc -5'
22729 3' -54.3 NC_005091.1 + 17286 0.67 0.756983
Target:  5'- gAUGCGCCcaugugaagaucaGGUCcccACGGaCGGACGAGa- -3'
miRNA:   3'- gUACGCGG-------------UCAG---UGCC-GCUUGCUUgc -5'
22729 3' -54.3 NC_005091.1 + 12116 0.67 0.75801
Target:  5'- gAUGCGgaaCGG-CACGGCGAgcACGAugaugGCGa -3'
miRNA:   3'- gUACGCg--GUCaGUGCCGCU--UGCU-----UGC- -5'
22729 3' -54.3 NC_005091.1 + 38264 0.67 0.75801
Target:  5'- cCGUGUGCCAcGgacgC-CGGaUGAACGAGCa -3'
miRNA:   3'- -GUACGCGGU-Ca---GuGCC-GCUUGCUUGc -5'
22729 3' -54.3 NC_005091.1 + 57895 0.67 0.747689
Target:  5'- -cUGCGCC-GUCGCGuGCGugaGAACc -3'
miRNA:   3'- guACGCGGuCAGUGC-CGCuugCUUGc -5'
22729 3' -54.3 NC_005091.1 + 501 0.67 0.747689
Target:  5'- -cUGCGCC-GUCGCGuGCGugaGAACc -3'
miRNA:   3'- guACGCGGuCAGUGC-CGCuugCUUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.