miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22729 3' -54.3 NC_005091.1 + 31 0.66 0.797897
Target:  5'- gCAUGCGCgAGUCG-GGCGuuccuaucAugGGGCu -3'
miRNA:   3'- -GUACGCGgUCAGUgCCGC--------UugCUUGc -5'
22729 3' -54.3 NC_005091.1 + 501 0.67 0.747689
Target:  5'- -cUGCGCC-GUCGCGuGCGugaGAACc -3'
miRNA:   3'- guACGCGGuCAGUGC-CGCuugCUUGc -5'
22729 3' -54.3 NC_005091.1 + 3625 0.67 0.737251
Target:  5'- --cGCGUCcGUCACGGCGuGCaGGAuCGg -3'
miRNA:   3'- guaCGCGGuCAGUGCCGCuUG-CUU-GC- -5'
22729 3' -54.3 NC_005091.1 + 4822 0.71 0.510154
Target:  5'- --cGCGCuCGG-CGCGGCGGcaacggucaaGCGGGCGa -3'
miRNA:   3'- guaCGCG-GUCaGUGCCGCU----------UGCUUGC- -5'
22729 3' -54.3 NC_005091.1 + 5695 0.75 0.301599
Target:  5'- -uUGCGCCGGaUCAuccCGGCGAucuccuuaGCGAGCGc -3'
miRNA:   3'- guACGCGGUC-AGU---GCCGCU--------UGCUUGC- -5'
22729 3' -54.3 NC_005091.1 + 7178 0.68 0.647606
Target:  5'- --cGCGCCgacacgagcaagacGGaUgGCGGCGAgcaGCGAGCGg -3'
miRNA:   3'- guaCGCGG--------------UC-AgUGCCGCU---UGCUUGC- -5'
22729 3' -54.3 NC_005091.1 + 7533 0.66 0.788157
Target:  5'- aAU-CGCCGGUCggcACGGCGGAaGGGCu -3'
miRNA:   3'- gUAcGCGGUCAG---UGCCGCUUgCUUGc -5'
22729 3' -54.3 NC_005091.1 + 12116 0.67 0.75801
Target:  5'- gAUGCGgaaCGG-CACGGCGAgcACGAugaugGCGa -3'
miRNA:   3'- gUACGCg--GUCaGUGCCGCU--UGCU-----UGC- -5'
22729 3' -54.3 NC_005091.1 + 14285 0.68 0.694559
Target:  5'- gAUGCGUauCGGcuUCGCGGUGucgucGGCGAGCGg -3'
miRNA:   3'- gUACGCG--GUC--AGUGCCGC-----UUGCUUGC- -5'
22729 3' -54.3 NC_005091.1 + 15363 0.67 0.704274
Target:  5'- aAUGCGUCuGUUGuCGGUGAagcgcccACGGACGg -3'
miRNA:   3'- gUACGCGGuCAGU-GCCGCU-------UGCUUGC- -5'
22729 3' -54.3 NC_005091.1 + 16255 0.69 0.617938
Target:  5'- gAUGCGCCGcUCGCGaCGAACGcGCc -3'
miRNA:   3'- gUACGCGGUcAGUGCcGCUUGCuUGc -5'
22729 3' -54.3 NC_005091.1 + 16817 0.71 0.520642
Target:  5'- gCGUGgGCCAaUCACGG-GGACGAcguaGCGg -3'
miRNA:   3'- -GUACgCGGUcAGUGCCgCUUGCU----UGC- -5'
22729 3' -54.3 NC_005091.1 + 16971 0.67 0.71607
Target:  5'- --aGCGUCGGgCugGGgGAcgaccACGAACGg -3'
miRNA:   3'- guaCGCGGUCaGugCCgCU-----UGCUUGC- -5'
22729 3' -54.3 NC_005091.1 + 17286 0.67 0.756983
Target:  5'- gAUGCGCCcaugugaagaucaGGUCcccACGGaCGGACGAGa- -3'
miRNA:   3'- gUACGCGG-------------UCAG---UGCC-GCUUGCUUgc -5'
22729 3' -54.3 NC_005091.1 + 17875 0.66 0.797897
Target:  5'- -cUGUGCgAGaUCGgcCGGCGAcaacugGCGAACGa -3'
miRNA:   3'- guACGCGgUC-AGU--GCCGCU------UGCUUGC- -5'
22729 3' -54.3 NC_005091.1 + 19399 0.66 0.797897
Target:  5'- gCAUGUGCgAG-CGCGGCGcuCGGGa- -3'
miRNA:   3'- -GUACGCGgUCaGUGCCGCuuGCUUgc -5'
22729 3' -54.3 NC_005091.1 + 23345 0.69 0.596008
Target:  5'- gCAUGuCGCgCAGUgCGuCGGCGAgcugguuuGCGAACGc -3'
miRNA:   3'- -GUAC-GCG-GUCA-GU-GCCGCU--------UGCUUGC- -5'
22729 3' -54.3 NC_005091.1 + 23535 0.69 0.628926
Target:  5'- -cUGCGCCAG--AUGGCGAGCGucaucauGCa -3'
miRNA:   3'- guACGCGGUCagUGCCGCUUGCu------UGc -5'
22729 3' -54.3 NC_005091.1 + 25805 0.68 0.690224
Target:  5'- -uUGCGCCGGcugccuuggccgaCACGGCGAACuuGCc -3'
miRNA:   3'- guACGCGGUCa------------GUGCCGCUUGcuUGc -5'
22729 3' -54.3 NC_005091.1 + 26131 0.69 0.639916
Target:  5'- --aGCGCguG-CGCGGCGAGCuGAucGCGc -3'
miRNA:   3'- guaCGCGguCaGUGCCGCUUG-CU--UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.