miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22729 3' -54.3 NC_005091.1 + 52928 1.08 0.001607
Target:  5'- aCAUGCGCCAGUCACGGCGAACGAACGc -3'
miRNA:   3'- -GUACGCGGUCAGUGCCGCUUGCUUGC- -5'
22729 3' -54.3 NC_005091.1 + 53073 0.78 0.187609
Target:  5'- aCGUGCGCCGGUCAUGGUgcgggguucgcuGAucgcggcgagcaugGCGAACGg -3'
miRNA:   3'- -GUACGCGGUCAGUGCCG------------CU--------------UGCUUGC- -5'
22729 3' -54.3 NC_005091.1 + 5695 0.75 0.301599
Target:  5'- -uUGCGCCGGaUCAuccCGGCGAucuccuuaGCGAGCGc -3'
miRNA:   3'- guACGCGGUC-AGU---GCCGCU--------UGCUUGC- -5'
22729 3' -54.3 NC_005091.1 + 4822 0.71 0.510154
Target:  5'- --cGCGCuCGG-CGCGGCGGcaacggucaaGCGGGCGa -3'
miRNA:   3'- guaCGCG-GUCaGUGCCGCU----------UGCUUGC- -5'
22729 3' -54.3 NC_005091.1 + 32025 0.71 0.520642
Target:  5'- -uUGCgGCCcGUCGCcuuGGCGAGCGAcGCGa -3'
miRNA:   3'- guACG-CGGuCAGUG---CCGCUUGCU-UGC- -5'
22729 3' -54.3 NC_005091.1 + 16817 0.71 0.520642
Target:  5'- gCGUGgGCCAaUCACGG-GGACGAcguaGCGg -3'
miRNA:   3'- -GUACgCGGUcAGUGCCgCUUGCU----UGC- -5'
22729 3' -54.3 NC_005091.1 + 52456 0.69 0.585084
Target:  5'- --cGCGCCGG--GCGGCGAccccAUGAAUGa -3'
miRNA:   3'- guaCGCGGUCagUGCCGCU----UGCUUGC- -5'
22729 3' -54.3 NC_005091.1 + 23345 0.69 0.596008
Target:  5'- gCAUGuCGCgCAGUgCGuCGGCGAgcugguuuGCGAACGc -3'
miRNA:   3'- -GUAC-GCG-GUCA-GU-GCCGCU--------UGCUUGC- -5'
22729 3' -54.3 NC_005091.1 + 55844 0.69 0.596008
Target:  5'- --cGCaGCCGGUCAgcaacUGGCGcACGAGCu -3'
miRNA:   3'- guaCG-CGGUCAGU-----GCCGCuUGCUUGc -5'
22729 3' -54.3 NC_005091.1 + 46094 0.69 0.606962
Target:  5'- -cUGCGuuCCGG-CGCGGUGcGCGAGCGc -3'
miRNA:   3'- guACGC--GGUCaGUGCCGCuUGCUUGC- -5'
22729 3' -54.3 NC_005091.1 + 16255 0.69 0.617938
Target:  5'- gAUGCGCCGcUCGCGaCGAACGcGCc -3'
miRNA:   3'- gUACGCGGUcAGUGCcGCUUGCuUGc -5'
22729 3' -54.3 NC_005091.1 + 23535 0.69 0.628926
Target:  5'- -cUGCGCCAG--AUGGCGAGCGucaucauGCa -3'
miRNA:   3'- guACGCGGUCagUGCCGCUUGCu------UGc -5'
22729 3' -54.3 NC_005091.1 + 52915 0.69 0.628926
Target:  5'- --aGCGCCGaaCgAUGGCGAAUGAAUGg -3'
miRNA:   3'- guaCGCGGUcaG-UGCCGCUUGCUUGC- -5'
22729 3' -54.3 NC_005091.1 + 26131 0.69 0.639916
Target:  5'- --aGCGCguG-CGCGGCGAGCuGAucGCGc -3'
miRNA:   3'- guaCGCGguCaGUGCCGCUUG-CU--UGC- -5'
22729 3' -54.3 NC_005091.1 + 7178 0.68 0.647606
Target:  5'- --cGCGCCgacacgagcaagacGGaUgGCGGCGAgcaGCGAGCGg -3'
miRNA:   3'- guaCGCGG--------------UC-AgUGCCGCU---UGCUUGC- -5'
22729 3' -54.3 NC_005091.1 + 36440 0.68 0.661867
Target:  5'- cCAUGCGCaCGGUauCGGCGcACGAuacaGCGu -3'
miRNA:   3'- -GUACGCG-GUCAguGCCGCuUGCU----UGC- -5'
22729 3' -54.3 NC_005091.1 + 25805 0.68 0.690224
Target:  5'- -uUGCGCCGGcugccuuggccgaCACGGCGAACuuGCc -3'
miRNA:   3'- guACGCGGUCa------------GUGCCGCUUGcuUGc -5'
22729 3' -54.3 NC_005091.1 + 14285 0.68 0.694559
Target:  5'- gAUGCGUauCGGcuUCGCGGUGucgucGGCGAGCGg -3'
miRNA:   3'- gUACGCG--GUC--AGUGCCGC-----UUGCUUGC- -5'
22729 3' -54.3 NC_005091.1 + 15363 0.67 0.704274
Target:  5'- aAUGCGUCuGUUGuCGGUGAagcgcccACGGACGg -3'
miRNA:   3'- gUACGCGGuCAGU-GCCGCU-------UGCUUGC- -5'
22729 3' -54.3 NC_005091.1 + 51646 0.67 0.70535
Target:  5'- --aGCGgcuuuCCAGuUCGCGGCcauucGGGCGAGCGa -3'
miRNA:   3'- guaCGC-----GGUC-AGUGCCG-----CUUGCUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.