miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2273 5' -62.7 NC_001405.1 + 13944 0.66 0.259264
Target:  5'- uCUGGUguGGgAGgacgaugacuCGGCAGCGaCAGCAGCg -3'
miRNA:   3'- -GGCCG--CCgUC----------GCCGUCGCcGUCGUUG- -5'
2273 5' -62.7 NC_001405.1 + 25362 0.66 0.259264
Target:  5'- cCUGGCaaaCGGCcaugGGCGuGUGGCAGCAAUg -3'
miRNA:   3'- -GGCCGcc-GUCG----CCGU-CGCCGUCGUUG- -5'
2273 5' -62.7 NC_001405.1 + 8462 0.66 0.255336
Target:  5'- uUGGUGGCGGCGucgaugacuuGCAagaggccgcauccccGCGGC-GCGACu -3'
miRNA:   3'- gGCCGCCGUCGC----------CGU---------------CGCCGuCGUUG- -5'
2273 5' -62.7 NC_001405.1 + 27989 0.66 0.252744
Target:  5'- aCCGGa-GCcGCgGGCAaagcacuuGUGGCGGCGGCa -3'
miRNA:   3'- -GGCCgcCGuCG-CCGU--------CGCCGUCGUUG- -5'
2273 5' -62.7 NC_001405.1 + 12068 0.66 0.24636
Target:  5'- cCUGGCuGGCAcgGGCAGCGGCGaUAGa -3'
miRNA:   3'- -GGCCG-CCGUcgCCGUCGCCGUcGUUg -5'
2273 5' -62.7 NC_001405.1 + 8625 0.66 0.220421
Target:  5'- -aGGgGGCAGgGGCAcgucggcgccgcgcGCGGgCAGgAGCu -3'
miRNA:   3'- ggCCgCCGUCgCCGU--------------CGCC-GUCgUUG- -5'
2273 5' -62.7 NC_001405.1 + 11034 0.67 0.216426
Target:  5'- uCCGGU-GCuGCGGCAgauGCGccccccuccucaGCAGCGGCa -3'
miRNA:   3'- -GGCCGcCGuCGCCGU---CGC------------CGUCGUUG- -5'
2273 5' -62.7 NC_001405.1 + 33191 0.67 0.2
Target:  5'- -aGGauagGGCGGUGGU-GCuGCAGCAGCg -3'
miRNA:   3'- ggCCg---CCGUCGCCGuCGcCGUCGUUG- -5'
2273 5' -62.7 NC_001405.1 + 11133 0.68 0.18467
Target:  5'- -aGG-GGCAacauccGCGGCugacGCGGCGGCAGa -3'
miRNA:   3'- ggCCgCCGU------CGCCGu---CGCCGUCGUUg -5'
2273 5' -62.7 NC_001405.1 + 34262 0.68 0.179795
Target:  5'- gCGGUGGUGGauguuaucagGGCAGCGGC-GCAu- -3'
miRNA:   3'- gGCCGCCGUCg---------CCGUCGCCGuCGUug -5'
2273 5' -62.7 NC_001405.1 + 18619 0.68 0.174564
Target:  5'- aCGGCGGaCGGCccuGGCAGCacagguuucugcuGGguGuCAGCg -3'
miRNA:   3'- gGCCGCC-GUCG---CCGUCG-------------CCguC-GUUG- -5'
2273 5' -62.7 NC_001405.1 + 10852 0.68 0.165849
Target:  5'- gCGcGCGGcCAGUGGCcaaaaaagcuAGCG-CAGCAGCc -3'
miRNA:   3'- gGC-CGCC-GUCGCCG----------UCGCcGUCGUUG- -5'
2273 5' -62.7 NC_001405.1 + 12668 0.68 0.165849
Target:  5'- gUGGC-GCAGCGugaGC-GCGcGCAGCAGCa -3'
miRNA:   3'- gGCCGcCGUCGC---CGuCGC-CGUCGUUG- -5'
2273 5' -62.7 NC_001405.1 + 16316 0.68 0.165849
Target:  5'- uCCaGGCGaCgAGCGGCcGCcGCAGCAGCc -3'
miRNA:   3'- -GG-CCGCcG-UCGCCGuCGcCGUCGUUG- -5'
2273 5' -62.7 NC_001405.1 + 16124 0.68 0.16142
Target:  5'- aCUGGUGGCGGCGugGGCGuGUAGUuGCg -3'
miRNA:   3'- -GGCCGCCGUCGCcgUCGC-CGUCGuUG- -5'
2273 5' -62.7 NC_001405.1 + 16496 0.69 0.152882
Target:  5'- ------cCAGCGGCGGCGGCGcGCAACg -3'
miRNA:   3'- ggccgccGUCGCCGUCGCCGU-CGUUG- -5'
2273 5' -62.7 NC_001405.1 + 18665 0.69 0.152882
Target:  5'- gCUGGCGGCA-CGGCGcagggacgcGCGGCuagGGCGGg -3'
miRNA:   3'- -GGCCGCCGUcGCCGU---------CGCCG---UCGUUg -5'
2273 5' -62.7 NC_001405.1 + 15173 0.69 0.148362
Target:  5'- aCgGGCGGaggagaAGCgcgcugaggccgaGGCAGCGGCAGaAGCu -3'
miRNA:   3'- -GgCCGCCg-----UCG-------------CCGUCGCCGUCgUUG- -5'
2273 5' -62.7 NC_001405.1 + 17332 0.69 0.146348
Target:  5'- gCGGCcGCAGCGGCcgccugcaccGCGGCaucugccaccgccgaGGCAACc -3'
miRNA:   3'- gGCCGcCGUCGCCGu---------CGCCG---------------UCGUUG- -5'
2273 5' -62.7 NC_001405.1 + 17653 0.7 0.129675
Target:  5'- -gGGUGGUAGCGcGCuGuUGGCAGCAc- -3'
miRNA:   3'- ggCCGCCGUCGC-CGuC-GCCGUCGUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.