miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22733 5' -49.7 NC_005091.1 + 55418 1.14 0.001987
Target:  5'- gCUCACGAAGCUUCGCAAUAGCGUCGCg -3'
miRNA:   3'- -GAGUGCUUCGAAGCGUUAUCGCAGCG- -5'
22733 5' -49.7 NC_005091.1 + 55493 0.78 0.407466
Target:  5'- aUUGCGAAGCUUCGUg--AGCGUgGCc -3'
miRNA:   3'- gAGUGCUUCGAAGCGuuaUCGCAgCG- -5'
22733 5' -49.7 NC_005091.1 + 14290 0.77 0.426946
Target:  5'- gUCACGAugcguaucGGCUUCGCGGUGuCGUCGg -3'
miRNA:   3'- gAGUGCU--------UCGAAGCGUUAUcGCAGCg -5'
22733 5' -49.7 NC_005091.1 + 55023 0.76 0.488513
Target:  5'- -gCGCGgcGCUUgGCGAgcGCGUUGCg -3'
miRNA:   3'- gaGUGCuuCGAAgCGUUauCGCAGCG- -5'
22733 5' -49.7 NC_005091.1 + 56792 0.76 0.488513
Target:  5'- aUCGCG-GGCaaCGCGAUGGCGUgGCu -3'
miRNA:   3'- gAGUGCuUCGaaGCGUUAUCGCAgCG- -5'
22733 5' -49.7 NC_005091.1 + 51994 0.74 0.610329
Target:  5'- gCUCGCGAuGGUcggCGCuacGGCGUCGCa -3'
miRNA:   3'- -GAGUGCU-UCGaa-GCGuuaUCGCAGCG- -5'
22733 5' -49.7 NC_005091.1 + 30225 0.73 0.655858
Target:  5'- --gGCGAAGCcccgCGCGAaAGCGUCGg -3'
miRNA:   3'- gagUGCUUCGaa--GCGUUaUCGCAGCg -5'
22733 5' -49.7 NC_005091.1 + 12348 0.73 0.655858
Target:  5'- gCUCgACGuGGUUcaUCGCAGuUGGCGUCGUg -3'
miRNA:   3'- -GAG-UGCuUCGA--AGCGUU-AUCGCAGCG- -5'
22733 5' -49.7 NC_005091.1 + 56117 0.72 0.689796
Target:  5'- -aCGCGAAGaCUUucCGCAAggcUAGCGUCGa -3'
miRNA:   3'- gaGUGCUUC-GAA--GCGUU---AUCGCAGCg -5'
22733 5' -49.7 NC_005091.1 + 50584 0.72 0.723198
Target:  5'- --uGCGGuAGUcgCGCAAcAGCGUCGCg -3'
miRNA:   3'- gagUGCU-UCGaaGCGUUaUCGCAGCG- -5'
22733 5' -49.7 NC_005091.1 + 56194 0.71 0.766317
Target:  5'- cCUUGCGGaaAGuCUUCGCGuuguagcuguccAUGGUGUCGCc -3'
miRNA:   3'- -GAGUGCU--UC-GAAGCGU------------UAUCGCAGCG- -5'
22733 5' -49.7 NC_005091.1 + 9500 0.71 0.766317
Target:  5'- aUCGCGAGGCcggcagcCGCGAUGGCGaguucugcUUGCu -3'
miRNA:   3'- gAGUGCUUCGaa-----GCGUUAUCGC--------AGCG- -5'
22733 5' -49.7 NC_005091.1 + 2391 0.7 0.816802
Target:  5'- --gGCGAccuucGGCgucgUCGCGAU-GCGUCGUg -3'
miRNA:   3'- gagUGCU-----UCGa---AGCGUUAuCGCAGCG- -5'
22733 5' -49.7 NC_005091.1 + 45819 0.69 0.844697
Target:  5'- cCUCGCGAacGGCca-GCAGUu-CGUCGCg -3'
miRNA:   3'- -GAGUGCU--UCGaagCGUUAucGCAGCG- -5'
22733 5' -49.7 NC_005091.1 + 24357 0.69 0.870444
Target:  5'- uUCugGua-CUUCGCGAUcGUGUCGUa -3'
miRNA:   3'- gAGugCuucGAAGCGUUAuCGCAGCG- -5'
22733 5' -49.7 NC_005091.1 + 449 0.69 0.878508
Target:  5'- uUCACGAcGGCgUCGaCGGUAGCGacaUUGCc -3'
miRNA:   3'- gAGUGCU-UCGaAGC-GUUAUCGC---AGCG- -5'
22733 5' -49.7 NC_005091.1 + 57843 0.69 0.878508
Target:  5'- uUCACGAcGGCgUCGaCGGUAGCGacaUUGCc -3'
miRNA:   3'- gAGUGCU-UCGaAGC-GUUAUCGC---AGCG- -5'
22733 5' -49.7 NC_005091.1 + 50777 0.69 0.878508
Target:  5'- uUCGCGGgccAGCUUgGCAAcgcucGGCG-CGCg -3'
miRNA:   3'- gAGUGCU---UCGAAgCGUUa----UCGCaGCG- -5'
22733 5' -49.7 NC_005091.1 + 49277 0.69 0.878508
Target:  5'- -aCACGAGGCgcagUUCGUcg-GGCGUgCGCc -3'
miRNA:   3'- gaGUGCUUCG----AAGCGuuaUCGCA-GCG- -5'
22733 5' -49.7 NC_005091.1 + 30154 0.68 0.886299
Target:  5'- -gCGCGggGCUUCGCc--GGCuUCGa -3'
miRNA:   3'- gaGUGCuuCGAAGCGuuaUCGcAGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.