miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22733 5' -49.7 NC_005091.1 + 449 0.69 0.878508
Target:  5'- uUCACGAcGGCgUCGaCGGUAGCGacaUUGCc -3'
miRNA:   3'- gAGUGCU-UCGaAGC-GUUAUCGC---AGCG- -5'
22733 5' -49.7 NC_005091.1 + 2391 0.7 0.816802
Target:  5'- --gGCGAccuucGGCgucgUCGCGAU-GCGUCGUg -3'
miRNA:   3'- gagUGCU-----UCGa---AGCGUUAuCGCAGCG- -5'
22733 5' -49.7 NC_005091.1 + 4731 0.67 0.943461
Target:  5'- -gCGCGGAGCUgCGCGAUGcUGUCu- -3'
miRNA:   3'- gaGUGCUUCGAaGCGUUAUcGCAGcg -5'
22733 5' -49.7 NC_005091.1 + 4998 0.67 0.932817
Target:  5'- -gCGCGAAGCauucgaUCGCGuccuGCGcCGCa -3'
miRNA:   3'- gaGUGCUUCGa-----AGCGUuau-CGCaGCG- -5'
22733 5' -49.7 NC_005091.1 + 9500 0.71 0.766317
Target:  5'- aUCGCGAGGCcggcagcCGCGAUGGCGaguucugcUUGCu -3'
miRNA:   3'- gAGUGCUUCGaa-----GCGUUAUCGC--------AGCG- -5'
22733 5' -49.7 NC_005091.1 + 10291 0.66 0.961286
Target:  5'- uUCACGAaagAGCUggaaaUCgGCGcgAGCgGUCGUa -3'
miRNA:   3'- gAGUGCU---UCGA-----AG-CGUuaUCG-CAGCG- -5'
22733 5' -49.7 NC_005091.1 + 11001 0.66 0.957252
Target:  5'- aCUC-UGAugccGGCUUCGCc--GGgGUCGCu -3'
miRNA:   3'- -GAGuGCU----UCGAAGCGuuaUCgCAGCG- -5'
22733 5' -49.7 NC_005091.1 + 12348 0.73 0.655858
Target:  5'- gCUCgACGuGGUUcaUCGCAGuUGGCGUCGUg -3'
miRNA:   3'- -GAG-UGCuUCGA--AGCGUU-AUCGCAGCG- -5'
22733 5' -49.7 NC_005091.1 + 14290 0.77 0.426946
Target:  5'- gUCACGAugcguaucGGCUUCGCGGUGuCGUCGg -3'
miRNA:   3'- gAGUGCU--------UCGAAGCGUUAUcGCAGCg -5'
22733 5' -49.7 NC_005091.1 + 17660 0.66 0.957252
Target:  5'- -gCACGAAGCUgguaacgauUCGaCGGgguuGCGUCGa -3'
miRNA:   3'- gaGUGCUUCGA---------AGC-GUUau--CGCAGCg -5'
22733 5' -49.7 NC_005091.1 + 18149 0.67 0.932817
Target:  5'- -gCGCG-AGCUUCGCGGcccGGCGaUCGa -3'
miRNA:   3'- gaGUGCuUCGAAGCGUUa--UCGC-AGCg -5'
22733 5' -49.7 NC_005091.1 + 19185 0.67 0.940391
Target:  5'- --uGCGgcGCUUUGCcGUGGCcccgucgaugaacugGUCGCg -3'
miRNA:   3'- gagUGCuuCGAAGCGuUAUCG---------------CAGCG- -5'
22733 5' -49.7 NC_005091.1 + 20358 0.67 0.932817
Target:  5'- -gCACGGcGGCUacUCGCAAagcGGCGaCGCg -3'
miRNA:   3'- gaGUGCU-UCGA--AGCGUUa--UCGCaGCG- -5'
22733 5' -49.7 NC_005091.1 + 21092 0.68 0.886299
Target:  5'- uUCACGAuac-UCGCAGUcGCGcCGCg -3'
miRNA:   3'- gAGUGCUucgaAGCGUUAuCGCaGCG- -5'
22733 5' -49.7 NC_005091.1 + 23626 0.67 0.927052
Target:  5'- aUCGCGAAuCUUCGCcAUGuccuUGUCGCa -3'
miRNA:   3'- gAGUGCUUcGAAGCGuUAUc---GCAGCG- -5'
22733 5' -49.7 NC_005091.1 + 24357 0.69 0.870444
Target:  5'- uUCugGua-CUUCGCGAUcGUGUCGUa -3'
miRNA:   3'- gAGugCuucGAAGCGUUAuCGCAGCG- -5'
22733 5' -49.7 NC_005091.1 + 26855 0.68 0.907985
Target:  5'- --gGCGAAGa--CGCGAgccggugcGGCGUCGCa -3'
miRNA:   3'- gagUGCUUCgaaGCGUUa-------UCGCAGCG- -5'
22733 5' -49.7 NC_005091.1 + 28350 0.67 0.927052
Target:  5'- gUCACGcAAGC--CGCcAgcGCGUCGCc -3'
miRNA:   3'- gAGUGC-UUCGaaGCGuUauCGCAGCG- -5'
22733 5' -49.7 NC_005091.1 + 30154 0.68 0.886299
Target:  5'- -gCGCGggGCUUCGCc--GGCuUCGa -3'
miRNA:   3'- gaGUGCuuCGAAGCGuuaUCGcAGCg -5'
22733 5' -49.7 NC_005091.1 + 30225 0.73 0.655858
Target:  5'- --gGCGAAGCcccgCGCGAaAGCGUCGg -3'
miRNA:   3'- gagUGCUUCGaa--GCGUUaUCGCAGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.