miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22733 5' -49.7 NC_005091.1 + 55418 1.14 0.001987
Target:  5'- gCUCACGAAGCUUCGCAAUAGCGUCGCg -3'
miRNA:   3'- -GAGUGCUUCGAAGCGUUAUCGCAGCG- -5'
22733 5' -49.7 NC_005091.1 + 10291 0.66 0.961286
Target:  5'- uUCACGAaagAGCUggaaaUCgGCGcgAGCgGUCGUa -3'
miRNA:   3'- gAGUGCU---UCGA-----AG-CGUuaUCG-CAGCG- -5'
22733 5' -49.7 NC_005091.1 + 45863 0.66 0.957252
Target:  5'- -aCACGAAGCggcCGUAcgaGUGGCucuacaagcaGUCGCc -3'
miRNA:   3'- gaGUGCUUCGaa-GCGU---UAUCG----------CAGCG- -5'
22733 5' -49.7 NC_005091.1 + 39072 0.66 0.957252
Target:  5'- gCUCGcCGggGUgcgCGCGA-GGCGUUGa -3'
miRNA:   3'- -GAGU-GCuuCGaa-GCGUUaUCGCAGCg -5'
22733 5' -49.7 NC_005091.1 + 11001 0.66 0.957252
Target:  5'- aCUC-UGAugccGGCUUCGCc--GGgGUCGCu -3'
miRNA:   3'- -GAGuGCU----UCGAAGCGuuaUCgCAGCG- -5'
22733 5' -49.7 NC_005091.1 + 18149 0.67 0.932817
Target:  5'- -gCGCG-AGCUUCGCGGcccGGCGaUCGa -3'
miRNA:   3'- gaGUGCuUCGAAGCGUUa--UCGC-AGCg -5'
22733 5' -49.7 NC_005091.1 + 4998 0.67 0.932817
Target:  5'- -gCGCGAAGCauucgaUCGCGuccuGCGcCGCa -3'
miRNA:   3'- gaGUGCUUCGa-----AGCGUuau-CGCaGCG- -5'
22733 5' -49.7 NC_005091.1 + 23626 0.67 0.927052
Target:  5'- aUCGCGAAuCUUCGCcAUGuccuUGUCGCa -3'
miRNA:   3'- gAGUGCUUcGAAGCGuUAUc---GCAGCG- -5'
22733 5' -49.7 NC_005091.1 + 21092 0.68 0.886299
Target:  5'- uUCACGAuac-UCGCAGUcGCGcCGCg -3'
miRNA:   3'- gAGUGCUucgaAGCGUUAuCGCaGCG- -5'
22733 5' -49.7 NC_005091.1 + 30154 0.68 0.886299
Target:  5'- -gCGCGggGCUUCGCc--GGCuUCGa -3'
miRNA:   3'- gaGUGCuuCGAAGCGuuaUCGcAGCg -5'
22733 5' -49.7 NC_005091.1 + 50777 0.69 0.878508
Target:  5'- uUCGCGGgccAGCUUgGCAAcgcucGGCG-CGCg -3'
miRNA:   3'- gAGUGCU---UCGAAgCGUUa----UCGCaGCG- -5'
22733 5' -49.7 NC_005091.1 + 56792 0.76 0.488513
Target:  5'- aUCGCG-GGCaaCGCGAUGGCGUgGCu -3'
miRNA:   3'- gAGUGCuUCGaaGCGUUAUCGCAgCG- -5'
22733 5' -49.7 NC_005091.1 + 51994 0.74 0.610329
Target:  5'- gCUCGCGAuGGUcggCGCuacGGCGUCGCa -3'
miRNA:   3'- -GAGUGCU-UCGaa-GCGuuaUCGCAGCG- -5'
22733 5' -49.7 NC_005091.1 + 56117 0.72 0.689796
Target:  5'- -aCGCGAAGaCUUucCGCAAggcUAGCGUCGa -3'
miRNA:   3'- gaGUGCUUC-GAA--GCGUU---AUCGCAGCg -5'
22733 5' -49.7 NC_005091.1 + 50584 0.72 0.723198
Target:  5'- --uGCGGuAGUcgCGCAAcAGCGUCGCg -3'
miRNA:   3'- gagUGCU-UCGaaGCGUUaUCGCAGCG- -5'
22733 5' -49.7 NC_005091.1 + 45819 0.69 0.844697
Target:  5'- cCUCGCGAacGGCca-GCAGUu-CGUCGCg -3'
miRNA:   3'- -GAGUGCU--UCGaagCGUUAucGCAGCG- -5'
22733 5' -49.7 NC_005091.1 + 24357 0.69 0.870444
Target:  5'- uUCugGua-CUUCGCGAUcGUGUCGUa -3'
miRNA:   3'- gAGugCuucGAAGCGUUAuCGCAGCG- -5'
22733 5' -49.7 NC_005091.1 + 49277 0.69 0.878508
Target:  5'- -aCACGAGGCgcagUUCGUcg-GGCGUgCGCc -3'
miRNA:   3'- gaGUGCUUCG----AAGCGuuaUCGCA-GCG- -5'
22733 5' -49.7 NC_005091.1 + 55493 0.78 0.407466
Target:  5'- aUUGCGAAGCUUCGUg--AGCGUgGCc -3'
miRNA:   3'- gAGUGCUUCGAAGCGuuaUCGCAgCG- -5'
22733 5' -49.7 NC_005091.1 + 45716 0.66 0.948345
Target:  5'- uUCGCGAAGcCUUCGUccgAGaUGUCGa -3'
miRNA:   3'- gAGUGCUUC-GAAGCGuuaUC-GCAGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.