miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22734 3' -67.2 NC_005091.1 + 56015 1.08 0.00012
Target:  5'- gCGCCGGCCGACCUCCCGCCCGCGCUGg -3'
miRNA:   3'- -GCGGCCGGCUGGAGGGCGGGCGCGAC- -5'
22734 3' -67.2 NC_005091.1 + 33220 0.74 0.054889
Target:  5'- gGCCGGCguaaugcgcggCGACCaUCUGCCCGCGCa- -3'
miRNA:   3'- gCGGCCG-----------GCUGGaGGGCGGGCGCGac -5'
22734 3' -67.2 NC_005091.1 + 30181 0.72 0.075492
Target:  5'- gGUCGG-CGACUUCgCCGCCCuuaaaGCGCUGg -3'
miRNA:   3'- gCGGCCgGCUGGAG-GGCGGG-----CGCGAC- -5'
22734 3' -67.2 NC_005091.1 + 4313 0.72 0.077511
Target:  5'- gCGCCGGCCGucguCUUCCUGuuuCCCG-GCUGg -3'
miRNA:   3'- -GCGGCCGGCu---GGAGGGC---GGGCgCGAC- -5'
22734 3' -67.2 NC_005091.1 + 17952 0.72 0.086114
Target:  5'- uCGCCGGCCGAUCucgcacaggUCCCGgCCGauaGCg- -3'
miRNA:   3'- -GCGGCCGGCUGG---------AGGGCgGGCg--CGac -5'
22734 3' -67.2 NC_005091.1 + 54989 0.72 0.088171
Target:  5'- uCGuCCGGCCGGgCggCCCGCcgguaucCCGUGCUGa -3'
miRNA:   3'- -GC-GGCCGGCUgGa-GGGCG-------GGCGCGAC- -5'
22734 3' -67.2 NC_005091.1 + 56269 0.71 0.095372
Target:  5'- aCGCCGGCCGAauaaucggUCUCCCGCuguaaauCCGgGCc- -3'
miRNA:   3'- -GCGGCCGGCU--------GGAGGGCG-------GGCgCGac -5'
22734 3' -67.2 NC_005091.1 + 34757 0.71 0.095621
Target:  5'- uGUCGGCC-AUgUCCCGgCCGCGCg- -3'
miRNA:   3'- gCGGCCGGcUGgAGGGCgGGCGCGac -5'
22734 3' -67.2 NC_005091.1 + 40928 0.7 0.117686
Target:  5'- gCGUaCGGCCGAgguugugaaCCugaacaccgcgUCCCGCCCaGCGCUGc -3'
miRNA:   3'- -GCG-GCCGGCU---------GG-----------AGGGCGGG-CGCGAC- -5'
22734 3' -67.2 NC_005091.1 + 38952 0.69 0.126799
Target:  5'- aCGCCGGCUgccgaGACCUaugaacaCCUGUUCGCGCa- -3'
miRNA:   3'- -GCGGCCGG-----CUGGA-------GGGCGGGCGCGac -5'
22734 3' -67.2 NC_005091.1 + 8097 0.69 0.127125
Target:  5'- uGCaGGCCGACCucgaUCCC-CUCGCGCa- -3'
miRNA:   3'- gCGgCCGGCUGG----AGGGcGGGCGCGac -5'
22734 3' -67.2 NC_005091.1 + 31710 0.69 0.130423
Target:  5'- gCGCCGGCCG-CCUUCgGC-UGCGCc- -3'
miRNA:   3'- -GCGGCCGGCuGGAGGgCGgGCGCGac -5'
22734 3' -67.2 NC_005091.1 + 26524 0.69 0.13244
Target:  5'- gGCUGGCCGugcgggcauuggccGCCUgcacauccugaCCCGCCuucgcgaCGCGCUGg -3'
miRNA:   3'- gCGGCCGGC--------------UGGA-----------GGGCGG-------GCGCGAC- -5'
22734 3' -67.2 NC_005091.1 + 39889 0.69 0.137259
Target:  5'- aCG-CGGCCGACCaUCCGgCUGCGCc- -3'
miRNA:   3'- -GCgGCCGGCUGGaGGGCgGGCGCGac -5'
22734 3' -67.2 NC_005091.1 + 36735 0.69 0.144423
Target:  5'- aCGCUGGCCGAaguCCagCCCGuCCCGUGa-- -3'
miRNA:   3'- -GCGGCCGGCU---GGa-GGGC-GGGCGCgac -5'
22734 3' -67.2 NC_005091.1 + 53423 0.69 0.14926
Target:  5'- uCGCUGGCCgugcauucgcccuuaGACCaUCCCGCcagaaagCCGCGCc- -3'
miRNA:   3'- -GCGGCCGG---------------CUGG-AGGGCG-------GGCGCGac -5'
22734 3' -67.2 NC_005091.1 + 31538 0.68 0.159782
Target:  5'- uGCUGGCgUGAUUcagUCCgGCCCGgCGCUGu -3'
miRNA:   3'- gCGGCCG-GCUGG---AGGgCGGGC-GCGAC- -5'
22734 3' -67.2 NC_005091.1 + 55907 0.68 0.168002
Target:  5'- gCGCagcaGGCCGACCaaCUGCgUGCGCa- -3'
miRNA:   3'- -GCGg---CCGGCUGGagGGCGgGCGCGac -5'
22734 3' -67.2 NC_005091.1 + 49807 0.68 0.172253
Target:  5'- aCGCaCGGCCGACgUgcCCCGCaugcagagcuaCGCGCa- -3'
miRNA:   3'- -GCG-GCCGGCUGgA--GGGCGg----------GCGCGac -5'
22734 3' -67.2 NC_005091.1 + 9329 0.68 0.17398
Target:  5'- uCGCCGGCCGgucgcccuucgcaggGCCgcaCCGCcggaaacaCCGCGCg- -3'
miRNA:   3'- -GCGGCCGGC---------------UGGag-GGCG--------GGCGCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.