miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22734 3' -67.2 NC_005091.1 + 33220 0.74 0.054889
Target:  5'- gGCCGGCguaaugcgcggCGACCaUCUGCCCGCGCa- -3'
miRNA:   3'- gCGGCCG-----------GCUGGaGGGCGGGCGCGac -5'
22734 3' -67.2 NC_005091.1 + 9288 0.66 0.242478
Target:  5'- cCGCUGGCCgccGACCggCUGgCCGUGCg- -3'
miRNA:   3'- -GCGGCCGG---CUGGagGGCgGGCGCGac -5'
22734 3' -67.2 NC_005091.1 + 30429 0.66 0.225654
Target:  5'- gGCCGGCCGAUgaCCuaCGCUacgcggguCGCGUUGu -3'
miRNA:   3'- gCGGCCGGCUGgaGG--GCGG--------GCGCGAC- -5'
22734 3' -67.2 NC_005091.1 + 26339 0.66 0.225654
Target:  5'- gCGcCCGGCCGcuacgauggcaGCC-CCggcgGCCCGCGCg- -3'
miRNA:   3'- -GC-GGCCGGC-----------UGGaGGg---CGGGCGCGac -5'
22734 3' -67.2 NC_005091.1 + 32845 0.66 0.220269
Target:  5'- uCGaugaCGGCCaugaugGGCUUUUCGuCCCGCGCUGc -3'
miRNA:   3'- -GCg---GCCGG------CUGGAGGGC-GGGCGCGAC- -5'
22734 3' -67.2 NC_005091.1 + 44529 0.67 0.204772
Target:  5'- gGCCGucgcuGCCGucGCCUUcgucgCCGCCCGCGUc- -3'
miRNA:   3'- gCGGC-----CGGC--UGGAG-----GGCGGGCGCGac -5'
22734 3' -67.2 NC_005091.1 + 32100 0.67 0.194972
Target:  5'- cCGCCGGCCggguccgcgccGACUUCCgGgUUGCuGCUGg -3'
miRNA:   3'- -GCGGCCGG-----------CUGGAGGgCgGGCG-CGAC- -5'
22734 3' -67.2 NC_005091.1 + 53927 0.67 0.181043
Target:  5'- gCGCCaGCCGAaacaaugCCUGCCCGUGUg- -3'
miRNA:   3'- -GCGGcCGGCUgga----GGGCGGGCGCGac -5'
22734 3' -67.2 NC_005091.1 + 3234 0.67 0.181043
Target:  5'- cCGCCGGCCgcucgaucgauGACUUCaa-CCCGCGCa- -3'
miRNA:   3'- -GCGGCCGG-----------CUGGAGggcGGGCGCGac -5'
22734 3' -67.2 NC_005091.1 + 11439 0.67 0.181043
Target:  5'- aCGUCGGCCGACgCUUUCGCCuugacgaucCG-GCUGu -3'
miRNA:   3'- -GCGGCCGGCUG-GAGGGCGG---------GCgCGAC- -5'
22734 3' -67.2 NC_005091.1 + 25654 0.67 0.181043
Target:  5'- aGCUGGCCGcgcaguUCUUCCGCCUGCacCUGc -3'
miRNA:   3'- gCGGCCGGCu-----GGAGGGCGGGCGc-GAC- -5'
22734 3' -67.2 NC_005091.1 + 53597 0.68 0.176599
Target:  5'- gCGCCGuCCGAuuccaaauagaaCCcCuuGCCCGUGCUGu -3'
miRNA:   3'- -GCGGCcGGCU------------GGaGggCGGGCGCGAC- -5'
22734 3' -67.2 NC_005091.1 + 53423 0.69 0.14926
Target:  5'- uCGCUGGCCgugcauucgcccuuaGACCaUCCCGCcagaaagCCGCGCc- -3'
miRNA:   3'- -GCGGCCGG---------------CUGG-AGGGCG-------GGCGCGac -5'
22734 3' -67.2 NC_005091.1 + 55907 0.68 0.168002
Target:  5'- gCGCagcaGGCCGACCaaCUGCgUGCGCa- -3'
miRNA:   3'- -GCGg---CCGGCUGGagGGCGgGCGCGac -5'
22734 3' -67.2 NC_005091.1 + 56015 1.08 0.00012
Target:  5'- gCGCCGGCCGACCUCCCGCCCGCGCUGg -3'
miRNA:   3'- -GCGGCCGGCUGGAGGGCGGGCGCGAC- -5'
22734 3' -67.2 NC_005091.1 + 4313 0.72 0.077511
Target:  5'- gCGCCGGCCGucguCUUCCUGuuuCCCG-GCUGg -3'
miRNA:   3'- -GCGGCCGGCu---GGAGGGC---GGGCgCGAC- -5'
22734 3' -67.2 NC_005091.1 + 54989 0.72 0.088171
Target:  5'- uCGuCCGGCCGGgCggCCCGCcgguaucCCGUGCUGa -3'
miRNA:   3'- -GC-GGCCGGCUgGa-GGGCG-------GGCGCGAC- -5'
22734 3' -67.2 NC_005091.1 + 56269 0.71 0.095372
Target:  5'- aCGCCGGCCGAauaaucggUCUCCCGCuguaaauCCGgGCc- -3'
miRNA:   3'- -GCGGCCGGCU--------GGAGGGCG-------GGCgCGac -5'
22734 3' -67.2 NC_005091.1 + 34757 0.71 0.095621
Target:  5'- uGUCGGCC-AUgUCCCGgCCGCGCg- -3'
miRNA:   3'- gCGGCCGGcUGgAGGGCgGGCGCGac -5'
22734 3' -67.2 NC_005091.1 + 40928 0.7 0.117686
Target:  5'- gCGUaCGGCCGAgguugugaaCCugaacaccgcgUCCCGCCCaGCGCUGc -3'
miRNA:   3'- -GCG-GCCGGCU---------GG-----------AGGGCGGG-CGCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.