miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22735 3' -57 NC_005091.1 + 48609 0.66 0.680484
Target:  5'- gCGGcCGUCGGGGUCccAUCCGgCgagGCgCGa -3'
miRNA:   3'- gGCC-GUAGCUCUAG--UAGGCgGa--CG-GC- -5'
22735 3' -57 NC_005091.1 + 5628 0.7 0.451348
Target:  5'- aCGGUAUUGAcGAgCGUCaggGCCUGCCu -3'
miRNA:   3'- gGCCGUAGCU-CUaGUAGg--CGGACGGc -5'
22735 3' -57 NC_005091.1 + 57332 0.7 0.451348
Target:  5'- gCCGGguUgCGGGAUgAUCgGCUUGuCCGg -3'
miRNA:   3'- -GGCCguA-GCUCUAgUAGgCGGAC-GGC- -5'
22735 3' -57 NC_005091.1 + 1542 0.73 0.291594
Target:  5'- gCCGGCcgCcGGAUCGUCCGgCUUGUCu -3'
miRNA:   3'- -GGCCGuaGcUCUAGUAGGC-GGACGGc -5'
22735 3' -57 NC_005091.1 + 14597 0.66 0.659126
Target:  5'- cCCGGCAUCGAGcggCA--CGCUUaCCGg -3'
miRNA:   3'- -GGCCGUAGCUCua-GUagGCGGAcGGC- -5'
22735 3' -57 NC_005091.1 + 30298 0.66 0.648407
Target:  5'- aCGuuGUCGAGGUCGaagaCGCCccgGCCGg -3'
miRNA:   3'- gGCcgUAGCUCUAGUag--GCGGa--CGGC- -5'
22735 3' -57 NC_005091.1 + 23427 0.67 0.631231
Target:  5'- aCCGGCcUCGGGA-CGuggggccuuggcgcuUCCguGCCUGCUGc -3'
miRNA:   3'- -GGCCGuAGCUCUaGU---------------AGG--CGGACGGC- -5'
22735 3' -57 NC_005091.1 + 30513 0.67 0.626935
Target:  5'- cCCGcGUAgCGuAGGUCAUCgGCCgGCCc -3'
miRNA:   3'- -GGC-CGUaGC-UCUAGUAGgCGGaCGGc -5'
22735 3' -57 NC_005091.1 + 18522 0.67 0.593713
Target:  5'- cCCGGCGacaauuccgcauuUCGAcuacaCGUCCgGCCUGCUGa -3'
miRNA:   3'- -GGCCGU-------------AGCUcua--GUAGG-CGGACGGC- -5'
22735 3' -57 NC_005091.1 + 1385 0.69 0.470795
Target:  5'- cCCGGCGU---GAUCGaCUGCUUGCCGc -3'
miRNA:   3'- -GGCCGUAgcuCUAGUaGGCGGACGGC- -5'
22735 3' -57 NC_005091.1 + 55693 0.68 0.527347
Target:  5'- cCCGGCuugccgcaucacuUCGccGAUCG-CCGCCUGCaCGa -3'
miRNA:   3'- -GGCCGu------------AGCu-CUAGUaGGCGGACG-GC- -5'
22735 3' -57 NC_005091.1 + 35807 0.67 0.594782
Target:  5'- aCCGGCAgcuucgCGaAGAagGUCUGCacgGCCGu -3'
miRNA:   3'- -GGCCGUa-----GC-UCUagUAGGCGga-CGGC- -5'
22735 3' -57 NC_005091.1 + 25720 0.66 0.680484
Target:  5'- gCGGCcagcUCGGcGAUCggCUGCCcGCCGc -3'
miRNA:   3'- gGCCGu---AGCU-CUAGuaGGCGGaCGGC- -5'
22735 3' -57 NC_005091.1 + 39496 0.68 0.510905
Target:  5'- uUGGCAUgGGGAagacggUCAUCUGCCUcacGCUGc -3'
miRNA:   3'- gGCCGUAgCUCU------AGUAGGCGGA---CGGC- -5'
22735 3' -57 NC_005091.1 + 9348 0.66 0.669822
Target:  5'- gCGGCgagcaGUCGAc--CAUUCGCCgGCCGg -3'
miRNA:   3'- gGCCG-----UAGCUcuaGUAGGCGGaCGGC- -5'
22735 3' -57 NC_005091.1 + 28368 0.67 0.616201
Target:  5'- aCCGGCAgcaaggCGaAGGUCAcgcaagCCGCCagcgcgucGCCGg -3'
miRNA:   3'- -GGCCGUa-----GC-UCUAGUa-----GGCGGa-------CGGC- -5'
22735 3' -57 NC_005091.1 + 53555 0.69 0.49066
Target:  5'- gCGGUGUCG---UCuUCCGCUUGCCGc -3'
miRNA:   3'- gGCCGUAGCucuAGuAGGCGGACGGC- -5'
22735 3' -57 NC_005091.1 + 8366 0.7 0.451348
Target:  5'- aCCGGCAUau---UCAUCUGCCggGCCa -3'
miRNA:   3'- -GGCCGUAgcucuAGUAGGCGGa-CGGc -5'
22735 3' -57 NC_005091.1 + 10114 0.66 0.659126
Target:  5'- cCCGGCGaugaacaaCGuGGUCG-CCGUCgUGCCGg -3'
miRNA:   3'- -GGCCGUa-------GCuCUAGUaGGCGG-ACGGC- -5'
22735 3' -57 NC_005091.1 + 17469 0.66 0.648407
Target:  5'- aCGaGCAcaaUCGAGAUCGUCgCGCggcagaacaUGCCa -3'
miRNA:   3'- gGC-CGU---AGCUCUAGUAG-GCGg--------ACGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.