miRNA display CGI


Results 1 - 20 of 30 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2275 3' -50.6 NC_001405.1 + 23130 0.66 0.84349
Target:  5'- ---aGAACCGGUggGGCCGAAAUgUGg -3'
miRNA:   3'- aggaUUUGGUCGa-CCGGUUUUGgACg -5'
2275 3' -50.6 NC_001405.1 + 32936 0.66 0.84349
Target:  5'- gUCCUuucuccCCGGCUGGCCuuAAaaaGCa -3'
miRNA:   3'- -AGGAuuu---GGUCGACCGGuuUUggaCG- -5'
2275 3' -50.6 NC_001405.1 + 2830 0.66 0.818306
Target:  5'- gCCUGGACCgauguaaggguucggGGCUGuGCCuuuuaCUGCu -3'
miRNA:   3'- aGGAUUUGG---------------UCGAC-CGGuuuugGACG- -5'
2275 3' -50.6 NC_001405.1 + 15169 0.66 0.81429
Target:  5'- gUCCUccACCGGCUGcauuGCCGcgGCUgccGCg -3'
miRNA:   3'- -AGGAuuUGGUCGAC----CGGUuuUGGa--CG- -5'
2275 3' -50.6 NC_001405.1 + 13763 0.66 0.804095
Target:  5'- aCCUAAACaacucgcuGCUGcaGCCGcagcgcgaaaaGAACCUGCc -3'
miRNA:   3'- aGGAUUUGgu------CGAC--CGGU-----------UUUGGACG- -5'
2275 3' -50.6 NC_001405.1 + 21381 0.66 0.803064
Target:  5'- aUCCUGAGuuGuuauGCUGGUgAAgaauuccAACCUGCu -3'
miRNA:   3'- -AGGAUUUggU----CGACCGgUU-------UUGGACG- -5'
2275 3' -50.6 NC_001405.1 + 14240 0.67 0.772309
Target:  5'- cCCUGGACCcGCcguuUGuGCCuccgcgguACCUGCg -3'
miRNA:   3'- aGGAUUUGGuCG----AC-CGGuuu-----UGGACG- -5'
2275 3' -50.6 NC_001405.1 + 12154 0.67 0.739011
Target:  5'- cCCUgGAGgCAGCUggGGCC-GGACCUGg -3'
miRNA:   3'- aGGA-UUUgGUCGA--CCGGuUUUGGACg -5'
2275 3' -50.6 NC_001405.1 + 12611 0.68 0.716162
Target:  5'- aCC-AGGCCGGCcucaucgGGCCGGAuggcCCUGUu -3'
miRNA:   3'- aGGaUUUGGUCGa------CCGGUUUu---GGACG- -5'
2275 3' -50.6 NC_001405.1 + 12894 0.68 0.704585
Target:  5'- aCCUGAGCCA---GGCUuucaAGAACUUGCa -3'
miRNA:   3'- aGGAUUUGGUcgaCCGG----UUUUGGACG- -5'
2275 3' -50.6 NC_001405.1 + 7725 0.68 0.704585
Target:  5'- gUCCUAAACUGGCgaccuaUGGCCAuuuuuUCUGg -3'
miRNA:   3'- -AGGAUUUGGUCG------ACCGGUuuu--GGACg -5'
2275 3' -50.6 NC_001405.1 + 13193 0.68 0.704585
Target:  5'- cUCCUGccCCAGCgcgcGGCUGAcACUUGUa -3'
miRNA:   3'- -AGGAUuuGGUCGa---CCGGUUuUGGACG- -5'
2275 3' -50.6 NC_001405.1 + 18154 0.69 0.657597
Target:  5'- gCCUGGAacagCAGCacaGGCCAGAugCUGa -3'
miRNA:   3'- aGGAUUUg---GUCGa--CCGGUUUugGACg -5'
2275 3' -50.6 NC_001405.1 + 29356 0.69 0.655228
Target:  5'- uUCCUGGACguUAGCgccugauuucuGCCAGcGCCUGCa -3'
miRNA:   3'- -AGGAUUUG--GUCGac---------CGGUUuUGGACG- -5'
2275 3' -50.6 NC_001405.1 + 9927 0.69 0.645747
Target:  5'- ---gAAGCCuggGGCaUGGCCGAccGCCUGCg -3'
miRNA:   3'- aggaUUUGG---UCG-ACCGGUUu-UGGACG- -5'
2275 3' -50.6 NC_001405.1 + 12493 0.69 0.645747
Target:  5'- ---aGAGCCGGUUGGCCugcGgCUGCu -3'
miRNA:   3'- aggaUUUGGUCGACCGGuuuUgGACG- -5'
2275 3' -50.6 NC_001405.1 + 12860 0.69 0.622018
Target:  5'- uUCC-AGACCAGUaga-CAAGGCCUGCa -3'
miRNA:   3'- -AGGaUUUGGUCGaccgGUUUUGGACG- -5'
2275 3' -50.6 NC_001405.1 + 8455 0.7 0.610163
Target:  5'- cCCUGAcCCGGCUaugcgaGGU--AAACCUGCa -3'
miRNA:   3'- aGGAUUuGGUCGA------CCGguUUUGGACG- -5'
2275 3' -50.6 NC_001405.1 + 671 0.7 0.610163
Target:  5'- cUCUUcGAUCAGCUGGuCCAAaaGACUgGCg -3'
miRNA:   3'- -AGGAuUUGGUCGACC-GGUU--UUGGaCG- -5'
2275 3' -50.6 NC_001405.1 + 15864 0.7 0.598329
Target:  5'- aUCCUuauaucgcCCAGCaauaacacaGGCUggGGCCUGCg -3'
miRNA:   3'- -AGGAuuu-----GGUCGa--------CCGGuuUUGGACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.