Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22832 | 5' | -49.9 | NC_005135.1 | + | 80328 | 0.7 | 0.97476 |
Target: 5'- cUGAGCGgGUCgCCAAgGCCgGAAGCgGUa -3' miRNA: 3'- -ACUUGUaUAG-GGUU-UGGgCUUCGgCG- -5' |
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22832 | 5' | -49.9 | NC_005135.1 | + | 78652 | 0.7 | 0.97476 |
Target: 5'- cGAACGUAUCCac-ACCCGccacaAGGCUGg -3' miRNA: 3'- aCUUGUAUAGGguuUGGGC-----UUCGGCg -5' |
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22832 | 5' | -49.9 | NC_005135.1 | + | 127330 | 0.71 | 0.954788 |
Target: 5'- cGAACGUcccacuUCUCAAACCC---GCCGCg -3' miRNA: 3'- aCUUGUAu-----AGGGUUUGGGcuuCGGCG- -5' |
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22832 | 5' | -49.9 | NC_005135.1 | + | 83878 | 0.71 | 0.946248 |
Target: 5'- gGAACAc-UCCCAGAUCUGGAGCUu- -3' miRNA: 3'- aCUUGUauAGGGUUUGGGCUUCGGcg -5' |
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22832 | 5' | -49.9 | NC_005135.1 | + | 72061 | 0.72 | 0.931561 |
Target: 5'- uUGAACAuUAUCCagcacgaAAugCCGAAGCgGUa -3' miRNA: 3'- -ACUUGU-AUAGGg------UUugGGCUUCGgCG- -5' |
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22832 | 5' | -49.9 | NC_005135.1 | + | 77842 | 0.72 | 0.931561 |
Target: 5'- aGAAC---UCCCAAGCCCGuuaauAGCUGa -3' miRNA: 3'- aCUUGuauAGGGUUUGGGCu----UCGGCg -5' |
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22832 | 5' | -49.9 | NC_005135.1 | + | 86192 | 0.74 | 0.873114 |
Target: 5'- cGAGCAUauuguuGUCCCGuuCCCGGaugaauuGGUCGCu -3' miRNA: 3'- aCUUGUA------UAGGGUuuGGGCU-------UCGGCG- -5' |
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22832 | 5' | -49.9 | NC_005135.1 | + | 53569 | 1.13 | 0.007366 |
Target: 5'- uUGAACAUAUCCCAAACCCGAAGCCGCu -3' miRNA: 3'- -ACUUGUAUAGGGUUUGGGCUUCGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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