miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22855 3' -53.5 NC_005137.2 + 130547 0.66 0.944147
Target:  5'- cGC-CGCGGCgGCAUAGAUucggAGCG-GuCGGa -3'
miRNA:   3'- -CGuGCGCCG-CGUAUUUA----UCGCgC-GCU- -5'
22855 3' -53.5 NC_005137.2 + 129529 0.69 0.830333
Target:  5'- uGCugGCGa-GCAUu-GUGGCGCGCa- -3'
miRNA:   3'- -CGugCGCcgCGUAuuUAUCGCGCGcu -5'
22855 3' -53.5 NC_005137.2 + 129039 0.67 0.917957
Target:  5'- uGCACGUuaacuucaucGGCGCuaAAAUuGUGCGCGu -3'
miRNA:   3'- -CGUGCG----------CCGCGuaUUUAuCGCGCGCu -5'
22855 3' -53.5 NC_005137.2 + 128532 1.11 0.002837
Target:  5'- cGCACGCGGCGCAUAAAUAGCGCGCGAu -3'
miRNA:   3'- -CGUGCGCCGCGUAUUUAUCGCGCGCU- -5'
22855 3' -53.5 NC_005137.2 + 126559 0.71 0.746208
Target:  5'- uUACGaCGGCGCG-AA--GGUGCGCGAc -3'
miRNA:   3'- cGUGC-GCCGCGUaUUuaUCGCGCGCU- -5'
22855 3' -53.5 NC_005137.2 + 125756 0.69 0.838847
Target:  5'- -uGCGCcGCGCGUuucGAGcGGCGCGUGGc -3'
miRNA:   3'- cgUGCGcCGCGUA---UUUaUCGCGCGCU- -5'
22855 3' -53.5 NC_005137.2 + 125033 0.71 0.756109
Target:  5'- -gGCGUGGCGCAggcaacgGAGccgGGCGgCGCGGc -3'
miRNA:   3'- cgUGCGCCGCGUa------UUUa--UCGC-GCGCU- -5'
22855 3' -53.5 NC_005137.2 + 124961 0.74 0.60096
Target:  5'- -aACGCGGCGCcgguGAUGGgGCGCu- -3'
miRNA:   3'- cgUGCGCCGCGuau-UUAUCgCGCGcu -5'
22855 3' -53.5 NC_005137.2 + 124397 0.66 0.939412
Target:  5'- uGCGCGC-GCGuCGUuuc-AGCGCGCa- -3'
miRNA:   3'- -CGUGCGcCGC-GUAuuuaUCGCGCGcu -5'
22855 3' -53.5 NC_005137.2 + 123817 0.71 0.773633
Target:  5'- gGCACGCGccgguucgaaauGCGCugcaac-GCGCGCGAu -3'
miRNA:   3'- -CGUGCGC------------CGCGuauuuauCGCGCGCU- -5'
22855 3' -53.5 NC_005137.2 + 122608 0.67 0.92919
Target:  5'- cGC-CGCGGaUGCGUGGcacaucGUuacuGCGCGUGAu -3'
miRNA:   3'- -CGuGCGCC-GCGUAUU------UAu---CGCGCGCU- -5'
22855 3' -53.5 NC_005137.2 + 122541 0.67 0.92919
Target:  5'- gGCACGUuaucGGCGCGUcgcAAUuGCGUaaGCGAg -3'
miRNA:   3'- -CGUGCG----CCGCGUAu--UUAuCGCG--CGCU- -5'
22855 3' -53.5 NC_005137.2 + 118105 0.68 0.878289
Target:  5'- cGCGUGCGGUGCAacaa-GGUGCGCa- -3'
miRNA:   3'- -CGUGCGCCGCGUauuuaUCGCGCGcu -5'
22855 3' -53.5 NC_005137.2 + 114413 0.68 0.905717
Target:  5'- aGC-CGCcGCGCAUcAAU-GCGCGCa- -3'
miRNA:   3'- -CGuGCGcCGCGUAuUUAuCGCGCGcu -5'
22855 3' -53.5 NC_005137.2 + 110708 0.79 0.337919
Target:  5'- uGCGCGCGuGCGCAacGGUGuGCGCGCa- -3'
miRNA:   3'- -CGUGCGC-CGCGUauUUAU-CGCGCGcu -5'
22855 3' -53.5 NC_005137.2 + 110643 0.67 0.911348
Target:  5'- cGCGcCGaCGGCGUuuggcuugugcccGUGAcgGGCGUGCGc -3'
miRNA:   3'- -CGU-GC-GCCGCG-------------UAUUuaUCGCGCGCu -5'
22855 3' -53.5 NC_005137.2 + 110422 0.67 0.911962
Target:  5'- aGCugGCaacgGGCGCGacGGUgAGCGUGCa- -3'
miRNA:   3'- -CGugCG----CCGCGUauUUA-UCGCGCGcu -5'
22855 3' -53.5 NC_005137.2 + 109084 0.66 0.956872
Target:  5'- uGC-UGCGGCGUucgAGGUAGCGCu--- -3'
miRNA:   3'- -CGuGCGCCGCGua-UUUAUCGCGcgcu -5'
22855 3' -53.5 NC_005137.2 + 108548 0.66 0.952045
Target:  5'- -aGCGCGGUGCAgccgacggAGCGCaCGu -3'
miRNA:   3'- cgUGCGCCGCGUauuua---UCGCGcGCu -5'
22855 3' -53.5 NC_005137.2 + 108152 0.71 0.746208
Target:  5'- gGCG-GCGGCgGCGUcgGUAuGCGCGCGc -3'
miRNA:   3'- -CGUgCGCCG-CGUAuuUAU-CGCGCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.