miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22855 3' -53.5 NC_005137.2 + 128532 1.11 0.002837
Target:  5'- cGCACGCGGCGCAUAAAUAGCGCGCGAu -3'
miRNA:   3'- -CGUGCGCCGCGUAUUUAUCGCGCGCU- -5'
22855 3' -53.5 NC_005137.2 + 10964 0.88 0.096523
Target:  5'- gGCACuuCGGuCGCGUGAAUAGCGCGCGAc -3'
miRNA:   3'- -CGUGc-GCC-GCGUAUUUAUCGCGCGCU- -5'
22855 3' -53.5 NC_005137.2 + 100051 0.83 0.207608
Target:  5'- gGCGCGCGGCGCGUucagcAUgcuuugugccgcGGCGCGCGGc -3'
miRNA:   3'- -CGUGCGCCGCGUAuu---UA------------UCGCGCGCU- -5'
22855 3' -53.5 NC_005137.2 + 101150 0.81 0.253637
Target:  5'- -aGCGCGGCGU-UGAGaAGCGCGCGAc -3'
miRNA:   3'- cgUGCGCCGCGuAUUUaUCGCGCGCU- -5'
22855 3' -53.5 NC_005137.2 + 110708 0.79 0.337919
Target:  5'- uGCGCGCGuGCGCAacGGUGuGCGCGCa- -3'
miRNA:   3'- -CGUGCGC-CGCGUauUUAU-CGCGCGcu -5'
22855 3' -53.5 NC_005137.2 + 7154 0.78 0.370206
Target:  5'- -uGCGCGGCGUGUAAGccGCGCGCu- -3'
miRNA:   3'- cgUGCGCCGCGUAUUUauCGCGCGcu -5'
22855 3' -53.5 NC_005137.2 + 31030 0.77 0.404538
Target:  5'- uGCGCuGCuGGCGCAcgAAGaGGCGCGCGGc -3'
miRNA:   3'- -CGUG-CG-CCGCGUa-UUUaUCGCGCGCU- -5'
22855 3' -53.5 NC_005137.2 + 60144 0.77 0.43157
Target:  5'- uCACGCGGCaGCAUGAccauGCGCGgGAu -3'
miRNA:   3'- cGUGCGCCG-CGUAUUuau-CGCGCgCU- -5'
22855 3' -53.5 NC_005137.2 + 68672 0.76 0.488628
Target:  5'- cGCGCGUGGCggaugacaGCAUAAuaAGCGUGCGc -3'
miRNA:   3'- -CGUGCGCCG--------CGUAUUuaUCGCGCGCu -5'
22855 3' -53.5 NC_005137.2 + 80923 0.75 0.528562
Target:  5'- -uGCGCGGC-CGUGGA-GGCGCGCGu -3'
miRNA:   3'- cgUGCGCCGcGUAUUUaUCGCGCGCu -5'
22855 3' -53.5 NC_005137.2 + 98169 0.74 0.60096
Target:  5'- gGCGCGCGGC-CAcAGAUAagauaCGCGCGAg -3'
miRNA:   3'- -CGUGCGCCGcGUaUUUAUc----GCGCGCU- -5'
22855 3' -53.5 NC_005137.2 + 124961 0.74 0.60096
Target:  5'- -aACGCGGCGCcgguGAUGGgGCGCu- -3'
miRNA:   3'- cgUGCGCCGCGuau-UUAUCgCGCGcu -5'
22855 3' -53.5 NC_005137.2 + 97990 0.74 0.605157
Target:  5'- gGCGCGCGGCGUgggugcgcccgccaaGUGGccAGCGUGCa- -3'
miRNA:   3'- -CGUGCGCCGCG---------------UAUUuaUCGCGCGcu -5'
22855 3' -53.5 NC_005137.2 + 54641 0.73 0.618818
Target:  5'- aGCAcuacauuuCGCGGCGCAauAAUAaacagucgcucgguGCGCGCGGg -3'
miRNA:   3'- -CGU--------GCGCCGCGUauUUAU--------------CGCGCGCU- -5'
22855 3' -53.5 NC_005137.2 + 3 0.73 0.632496
Target:  5'- aGUACGCGGgGCcaGUGAAcAGCgGCGCGu -3'
miRNA:   3'- -CGUGCGCCgCG--UAUUUaUCG-CGCGCu -5'
22855 3' -53.5 NC_005137.2 + 75590 0.73 0.653533
Target:  5'- cGCGgGCGGCGCcgu----GCGCGUGGa -3'
miRNA:   3'- -CGUgCGCCGCGuauuuauCGCGCGCU- -5'
22855 3' -53.5 NC_005137.2 + 84320 0.72 0.684929
Target:  5'- uGCGCGCGuGCgaGCAUAc-UGGCGCGUGc -3'
miRNA:   3'- -CGUGCGC-CG--CGUAUuuAUCGCGCGCu -5'
22855 3' -53.5 NC_005137.2 + 60982 0.72 0.695315
Target:  5'- cGUACGCGGUGCcgugGGAUugccGGCGgGUGAu -3'
miRNA:   3'- -CGUGCGCCGCGua--UUUA----UCGCgCGCU- -5'
22855 3' -53.5 NC_005137.2 + 126559 0.71 0.746208
Target:  5'- uUACGaCGGCGCG-AA--GGUGCGCGAc -3'
miRNA:   3'- cGUGC-GCCGCGUaUUuaUCGCGCGCU- -5'
22855 3' -53.5 NC_005137.2 + 35407 0.71 0.746208
Target:  5'- aGCACGUcGCGCAc----AGUGCGCGGg -3'
miRNA:   3'- -CGUGCGcCGCGUauuuaUCGCGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.