miRNA display CGI


Results 21 - 40 of 99 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22855 3' -53.5 NC_005137.2 + 35407 0.71 0.746208
Target:  5'- aGCACGUcGCGCAc----AGUGCGCGGg -3'
miRNA:   3'- -CGUGCGcCGCGUauuuaUCGCGCGCU- -5'
22855 3' -53.5 NC_005137.2 + 126559 0.71 0.746208
Target:  5'- uUACGaCGGCGCG-AA--GGUGCGCGAc -3'
miRNA:   3'- cGUGC-GCCGCGUaUUuaUCGCGCGCU- -5'
22855 3' -53.5 NC_005137.2 + 125033 0.71 0.756109
Target:  5'- -gGCGUGGCGCAggcaacgGAGccgGGCGgCGCGGc -3'
miRNA:   3'- cgUGCGCCGCGUa------UUUa--UCGC-GCGCU- -5'
22855 3' -53.5 NC_005137.2 + 7177 0.71 0.765895
Target:  5'- cGCGCGCGuugcaGCGCAUuucGAAccGGCGCGUGc -3'
miRNA:   3'- -CGUGCGC-----CGCGUA---UUUa-UCGCGCGCu -5'
22855 3' -53.5 NC_005137.2 + 123817 0.71 0.773633
Target:  5'- gGCACGCGccgguucgaaauGCGCugcaac-GCGCGCGAu -3'
miRNA:   3'- -CGUGCGC------------CGCGuauuuauCGCGCGCU- -5'
22855 3' -53.5 NC_005137.2 + 87242 0.7 0.803682
Target:  5'- gGCGCGCuGGUaguaGCGUucguUGGCGCGCa- -3'
miRNA:   3'- -CGUGCG-CCG----CGUAuuu-AUCGCGCGcu -5'
22855 3' -53.5 NC_005137.2 + 35395 0.7 0.821629
Target:  5'- -gACGCGaCGCAUuugGAAUcGGCGCGCGc -3'
miRNA:   3'- cgUGCGCcGCGUA---UUUA-UCGCGCGCu -5'
22855 3' -53.5 NC_005137.2 + 76202 0.7 0.821629
Target:  5'- uUugGUGGCGCuuuuUAuguacguugcGGUAGCGCuGCGAg -3'
miRNA:   3'- cGugCGCCGCGu---AU----------UUAUCGCG-CGCU- -5'
22855 3' -53.5 NC_005137.2 + 26512 0.69 0.830333
Target:  5'- -gACGCGGCcgAUGAcuuaaaaguGUGGCGCGCGu -3'
miRNA:   3'- cgUGCGCCGcgUAUU---------UAUCGCGCGCu -5'
22855 3' -53.5 NC_005137.2 + 129529 0.69 0.830333
Target:  5'- uGCugGCGa-GCAUu-GUGGCGCGCa- -3'
miRNA:   3'- -CGugCGCcgCGUAuuUAUCGCGCGcu -5'
22855 3' -53.5 NC_005137.2 + 81312 0.69 0.830333
Target:  5'- gGCcaaGCGGCGCGUAGuuaccgccGCGCGCc- -3'
miRNA:   3'- -CGug-CGCCGCGUAUUuau-----CGCGCGcu -5'
22855 3' -53.5 NC_005137.2 + 125756 0.69 0.838847
Target:  5'- -uGCGCcGCGCGUuucGAGcGGCGCGUGGc -3'
miRNA:   3'- cgUGCGcCGCGUA---UUUaUCGCGCGCU- -5'
22855 3' -53.5 NC_005137.2 + 50086 0.69 0.838847
Target:  5'- cGCGCGCcuccacGGcCGCGcAAAU-GCGCGUGAg -3'
miRNA:   3'- -CGUGCG------CC-GCGUaUUUAuCGCGCGCU- -5'
22855 3' -53.5 NC_005137.2 + 96493 0.69 0.838847
Target:  5'- uGCGCGUcguguccacgGGCGCuAUGAcUAGCGgCGCGc -3'
miRNA:   3'- -CGUGCG----------CCGCG-UAUUuAUCGC-GCGCu -5'
22855 3' -53.5 NC_005137.2 + 102947 0.69 0.847162
Target:  5'- aGC-CGUcuGGCGCAUccc-AGCGCGCGu -3'
miRNA:   3'- -CGuGCG--CCGCGUAuuuaUCGCGCGCu -5'
22855 3' -53.5 NC_005137.2 + 97430 0.69 0.85286
Target:  5'- cGgGCGCGGCGCAcucaaaaacaUGucggggcacaugguAGUGGCGgCGUGAc -3'
miRNA:   3'- -CgUGCGCCGCGU----------AU--------------UUAUCGC-GCGCU- -5'
22855 3' -53.5 NC_005137.2 + 79145 0.69 0.855271
Target:  5'- cGCGC-CGG-GCGUAAAaGGCGUGCa- -3'
miRNA:   3'- -CGUGcGCCgCGUAUUUaUCGCGCGcu -5'
22855 3' -53.5 NC_005137.2 + 42497 0.69 0.855271
Target:  5'- cGCACaCGGCGCuugcu--GCGCgGCGAc -3'
miRNA:   3'- -CGUGcGCCGCGuauuuauCGCG-CGCU- -5'
22855 3' -53.5 NC_005137.2 + 84566 0.69 0.855271
Target:  5'- aCACGuCGGCGCGUucg-GGCGgGuCGGg -3'
miRNA:   3'- cGUGC-GCCGCGUAuuuaUCGCgC-GCU- -5'
22855 3' -53.5 NC_005137.2 + 22890 0.69 0.863166
Target:  5'- -gAUGCGGUGCugcGAUcGGCGCGCa- -3'
miRNA:   3'- cgUGCGCCGCGuauUUA-UCGCGCGcu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.