miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22855 3' -53.5 NC_005137.2 + 31030 0.77 0.404538
Target:  5'- uGCGCuGCuGGCGCAcgAAGaGGCGCGCGGc -3'
miRNA:   3'- -CGUG-CG-CCGCGUa-UUUaUCGCGCGCU- -5'
22855 3' -53.5 NC_005137.2 + 32855 0.69 0.863166
Target:  5'- cGCGCGcCGGC-UAUAAAaGGCGCGgcCGAa -3'
miRNA:   3'- -CGUGC-GCCGcGUAUUUaUCGCGC--GCU- -5'
22855 3' -53.5 NC_005137.2 + 34583 0.67 0.934427
Target:  5'- cGCaACGCGGCgggcgcgucgccGCGcGGGUAGCggucgGCGCGGc -3'
miRNA:   3'- -CG-UGCGCCG------------CGUaUUUAUCG-----CGCGCU- -5'
22855 3' -53.5 NC_005137.2 + 35395 0.7 0.821629
Target:  5'- -gACGCGaCGCAUuugGAAUcGGCGCGCGc -3'
miRNA:   3'- cgUGCGCcGCGUA---UUUA-UCGCGCGCu -5'
22855 3' -53.5 NC_005137.2 + 35407 0.71 0.746208
Target:  5'- aGCACGUcGCGCAc----AGUGCGCGGg -3'
miRNA:   3'- -CGUGCGcCGCGUauuuaUCGCGCGCU- -5'
22855 3' -53.5 NC_005137.2 + 37537 0.66 0.948633
Target:  5'- gGCAaaCGGCGC-----UGGCGCGCa- -3'
miRNA:   3'- -CGUgcGCCGCGuauuuAUCGCGCGcu -5'
22855 3' -53.5 NC_005137.2 + 40244 0.69 0.863166
Target:  5'- cCACGuCGGaUGCAUuggccguGUGGCGCGCa- -3'
miRNA:   3'- cGUGC-GCC-GCGUAuu-----UAUCGCGCGcu -5'
22855 3' -53.5 NC_005137.2 + 42070 0.68 0.899224
Target:  5'- cGCGgGCGaaacGCGCGUGuuUAGCGUGUu- -3'
miRNA:   3'- -CGUgCGC----CGCGUAUuuAUCGCGCGcu -5'
22855 3' -53.5 NC_005137.2 + 42497 0.69 0.855271
Target:  5'- cGCACaCGGCGCuugcu--GCGCgGCGAc -3'
miRNA:   3'- -CGUGcGCCGCGuauuuauCGCG-CGCU- -5'
22855 3' -53.5 NC_005137.2 + 45451 0.68 0.885506
Target:  5'- aGCGgGCGGCGCAgca----CGCGCa- -3'
miRNA:   3'- -CGUgCGCCGCGUauuuaucGCGCGcu -5'
22855 3' -53.5 NC_005137.2 + 48780 0.68 0.892485
Target:  5'- -gACGCGGCGCcgcac-AGCGUGUGc -3'
miRNA:   3'- cgUGCGCCGCGuauuuaUCGCGCGCu -5'
22855 3' -53.5 NC_005137.2 + 49688 0.68 0.892485
Target:  5'- gGCGCGCGGCG-GUAAcUA-CGCGCc- -3'
miRNA:   3'- -CGUGCGCCGCgUAUUuAUcGCGCGcu -5'
22855 3' -53.5 NC_005137.2 + 50086 0.69 0.838847
Target:  5'- cGCGCGCcuccacGGcCGCGcAAAU-GCGCGUGAg -3'
miRNA:   3'- -CGUGCG------CC-GCGUaUUUAuCGCGCGCU- -5'
22855 3' -53.5 NC_005137.2 + 51285 0.68 0.878289
Target:  5'- cGCAauuUGCGGCgggcagcgGCAUAAcgAGUGCGCc- -3'
miRNA:   3'- -CGU---GCGCCG--------CGUAUUuaUCGCGCGcu -5'
22855 3' -53.5 NC_005137.2 + 53036 0.66 0.952873
Target:  5'- gGCACGaaacuCGGCaaacacCGUGAAUaaGGUGCGCGGu -3'
miRNA:   3'- -CGUGC-----GCCGc-----GUAUUUA--UCGCGCGCU- -5'
22855 3' -53.5 NC_005137.2 + 53622 0.67 0.911962
Target:  5'- aGCAUGUGGCGCAcucguuGCaaGCGGu -3'
miRNA:   3'- -CGUGCGCCGCGUauuuauCGcgCGCU- -5'
22855 3' -53.5 NC_005137.2 + 54641 0.73 0.618818
Target:  5'- aGCAcuacauuuCGCGGCGCAauAAUAaacagucgcucgguGCGCGCGGg -3'
miRNA:   3'- -CGU--------GCGCCGCGUauUUAU--------------CGCGCGCU- -5'
22855 3' -53.5 NC_005137.2 + 60144 0.77 0.43157
Target:  5'- uCACGCGGCaGCAUGAccauGCGCGgGAu -3'
miRNA:   3'- cGUGCGCCG-CGUAUUuau-CGCGCgCU- -5'
22855 3' -53.5 NC_005137.2 + 60982 0.72 0.695315
Target:  5'- cGUACGCGGUGCcgugGGAUugccGGCGgGUGAu -3'
miRNA:   3'- -CGUGCGCCGCGua--UUUA----UCGCgCGCU- -5'
22855 3' -53.5 NC_005137.2 + 68419 0.68 0.878289
Target:  5'- uGUACGUGGCGCAcGGGUugaacgagucGGCGCaGCc- -3'
miRNA:   3'- -CGUGCGCCGCGUaUUUA----------UCGCG-CGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.