miRNA display CGI


Results 21 - 40 of 99 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22855 3' -53.5 NC_005137.2 + 84923 0.66 0.939412
Target:  5'- uGCACGUcGCGUccaAAAUAGCgGCGCa- -3'
miRNA:   3'- -CGUGCGcCGCGua-UUUAUCG-CGCGcu -5'
22855 3' -53.5 NC_005137.2 + 124397 0.66 0.939412
Target:  5'- uGCGCGC-GCGuCGUuuc-AGCGCGCa- -3'
miRNA:   3'- -CGUGCGcCGC-GUAuuuaUCGCGCGcu -5'
22855 3' -53.5 NC_005137.2 + 16912 0.66 0.939412
Target:  5'- cGCACGCGGCGCu-------CG-GCGAa -3'
miRNA:   3'- -CGUGCGCCGCGuauuuaucGCgCGCU- -5'
22855 3' -53.5 NC_005137.2 + 11296 0.66 0.939412
Target:  5'- cGCuGCGCGGCgggauGCGUAcGUGcuaagcuguguGCGCGCGc -3'
miRNA:   3'- -CG-UGCGCCG-----CGUAUuUAU-----------CGCGCGCu -5'
22855 3' -53.5 NC_005137.2 + 71366 0.67 0.934427
Target:  5'- aCAacaGCGGCGUgccGUugcaaaAAGUGGCGCGCu- -3'
miRNA:   3'- cGUg--CGCCGCG---UA------UUUAUCGCGCGcu -5'
22855 3' -53.5 NC_005137.2 + 34583 0.67 0.934427
Target:  5'- cGCaACGCGGCgggcgcgucgccGCGcGGGUAGCggucgGCGCGGc -3'
miRNA:   3'- -CG-UGCGCCG------------CGUaUUUAUCG-----CGCGCU- -5'
22855 3' -53.5 NC_005137.2 + 99774 0.67 0.931315
Target:  5'- -gACGCGGC-CAUGuucaagcugguGUGCGCGAc -3'
miRNA:   3'- cgUGCGCCGcGUAUuuau-------CGCGCGCU- -5'
22855 3' -53.5 NC_005137.2 + 102762 0.67 0.92919
Target:  5'- gGCACguGCGGUGCGUGuugGGCGUucGCu- -3'
miRNA:   3'- -CGUG--CGCCGCGUAUuuaUCGCG--CGcu -5'
22855 3' -53.5 NC_005137.2 + 122541 0.67 0.92919
Target:  5'- gGCACGUuaucGGCGCGUcgcAAUuGCGUaaGCGAg -3'
miRNA:   3'- -CGUGCG----CCGCGUAu--UUAuCGCG--CGCU- -5'
22855 3' -53.5 NC_005137.2 + 107971 0.67 0.92919
Target:  5'- uGCGCGauCGGuCGCGUugac-GCGCGCGc -3'
miRNA:   3'- -CGUGC--GCC-GCGUAuuuauCGCGCGCu -5'
22855 3' -53.5 NC_005137.2 + 122608 0.67 0.92919
Target:  5'- cGC-CGCGGaUGCGUGGcacaucGUuacuGCGCGUGAu -3'
miRNA:   3'- -CGuGCGCC-GCGUAUU------UAu---CGCGCGCU- -5'
22855 3' -53.5 NC_005137.2 + 69281 0.67 0.923699
Target:  5'- cGguCGCGGCGCGUu--UAG-GCGUa- -3'
miRNA:   3'- -CguGCGCCGCGUAuuuAUCgCGCGcu -5'
22855 3' -53.5 NC_005137.2 + 106850 0.67 0.923699
Target:  5'- cGCACGCaguacGCGCAgauuGUGGC-CGCGu -3'
miRNA:   3'- -CGUGCGc----CGCGUauu-UAUCGcGCGCu -5'
22855 3' -53.5 NC_005137.2 + 102745 0.67 0.917957
Target:  5'- aGCACGUagacGaCGCG---GUGGCGUGCGAg -3'
miRNA:   3'- -CGUGCGc---C-GCGUauuUAUCGCGCGCU- -5'
22855 3' -53.5 NC_005137.2 + 100129 0.67 0.917957
Target:  5'- gGC-UGCGGCGCAU---UGGCGUuCGGu -3'
miRNA:   3'- -CGuGCGCCGCGUAuuuAUCGCGcGCU- -5'
22855 3' -53.5 NC_005137.2 + 28709 0.67 0.917957
Target:  5'- uCGCGUaauGGUGCAguuUGAAaGGCGCGCa- -3'
miRNA:   3'- cGUGCG---CCGCGU---AUUUaUCGCGCGcu -5'
22855 3' -53.5 NC_005137.2 + 96934 0.67 0.917957
Target:  5'- cGCcCGCGuGUGCAUGAAcauuGCGCuCGAc -3'
miRNA:   3'- -CGuGCGC-CGCGUAUUUau--CGCGcGCU- -5'
22855 3' -53.5 NC_005137.2 + 129039 0.67 0.917957
Target:  5'- uGCACGUuaacuucaucGGCGCuaAAAUuGUGCGCGu -3'
miRNA:   3'- -CGUGCG----------CCGCGuaUUUAuCGCGCGCu -5'
22855 3' -53.5 NC_005137.2 + 20312 0.67 0.911962
Target:  5'- cGCACGC-GCGCAUGacccgauacuuGAUGGgcucCGCGCa- -3'
miRNA:   3'- -CGUGCGcCGCGUAU-----------UUAUC----GCGCGcu -5'
22855 3' -53.5 NC_005137.2 + 110422 0.67 0.911962
Target:  5'- aGCugGCaacgGGCGCGacGGUgAGCGUGCa- -3'
miRNA:   3'- -CGugCG----CCGCGUauUUA-UCGCGCGcu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.