miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22855 3' -53.5 NC_005137.2 + 109084 0.66 0.956872
Target:  5'- uGC-UGCGGCGUucgAGGUAGCGCu--- -3'
miRNA:   3'- -CGuGCGCCGCGua-UUUAUCGCGcgcu -5'
22855 3' -53.5 NC_005137.2 + 11208 0.66 0.956872
Target:  5'- uGCGuuCGCGGuCGCGUAuacAGUuuuuucuGCGCGCa- -3'
miRNA:   3'- -CGU--GCGCC-GCGUAU---UUAu------CGCGCGcu -5'
22855 3' -53.5 NC_005137.2 + 90710 0.66 0.956872
Target:  5'- cGCugGUGGUGCGUGcc-AGCaaCGUGAu -3'
miRNA:   3'- -CGugCGCCGCGUAUuuaUCGc-GCGCU- -5'
22855 3' -53.5 NC_005137.2 + 101482 0.66 0.956872
Target:  5'- uGUuguCGCGGCGCAcccacAAAaacUGGCGUGCu- -3'
miRNA:   3'- -CGu--GCGCCGCGUa----UUU---AUCGCGCGcu -5'
22855 3' -53.5 NC_005137.2 + 1541 0.66 0.956872
Target:  5'- uUACGCauGCGCAUuaacguggcaAAAUGGCGCGaUGAu -3'
miRNA:   3'- cGUGCGc-CGCGUA----------UUUAUCGCGC-GCU- -5'
22855 3' -53.5 NC_005137.2 + 53036 0.66 0.952873
Target:  5'- gGCACGaaacuCGGCaaacacCGUGAAUaaGGUGCGCGGu -3'
miRNA:   3'- -CGUGC-----GCCGc-----GUAUUUA--UCGCGCGCU- -5'
22855 3' -53.5 NC_005137.2 + 100000 0.66 0.952873
Target:  5'- cGUA-GCGGCGCcgAcc-AGCGUGCGc -3'
miRNA:   3'- -CGUgCGCCGCGuaUuuaUCGCGCGCu -5'
22855 3' -53.5 NC_005137.2 + 2013 0.66 0.952873
Target:  5'- uGCACgcuGCGGCGCAgacUAuuUAGguCGCGCc- -3'
miRNA:   3'- -CGUG---CGCCGCGU---AUuuAUC--GCGCGcu -5'
22855 3' -53.5 NC_005137.2 + 108548 0.66 0.952045
Target:  5'- -aGCGCGGUGCAgccgacggAGCGCaCGu -3'
miRNA:   3'- cgUGCGCCGCGUauuua---UCGCGcGCu -5'
22855 3' -53.5 NC_005137.2 + 72800 0.66 0.951627
Target:  5'- cGUugGCGGCGCGcgcugccgucuugaUGuuUAGCauguaaaugaGCGCGu -3'
miRNA:   3'- -CGugCGCCGCGU--------------AUuuAUCG----------CGCGCu -5'
22855 3' -53.5 NC_005137.2 + 88548 0.66 0.951207
Target:  5'- aGUugGCGuaGCuAUAAAUuuucuugaugauuGCGCGCGGc -3'
miRNA:   3'- -CGugCGCcgCG-UAUUUAu------------CGCGCGCU- -5'
22855 3' -53.5 NC_005137.2 + 104342 0.66 0.948633
Target:  5'- cGCACGUGcGUGCGUcgucGUGuucGCGCuGCGAc -3'
miRNA:   3'- -CGUGCGC-CGCGUAuu--UAU---CGCG-CGCU- -5'
22855 3' -53.5 NC_005137.2 + 24305 0.66 0.948633
Target:  5'- gGCGuuUGCGGCuGCGguGGUGGCGgGCa- -3'
miRNA:   3'- -CGU--GCGCCG-CGUauUUAUCGCgCGcu -5'
22855 3' -53.5 NC_005137.2 + 37537 0.66 0.948633
Target:  5'- gGCAaaCGGCGC-----UGGCGCGCa- -3'
miRNA:   3'- -CGUgcGCCGCGuauuuAUCGCGCGcu -5'
22855 3' -53.5 NC_005137.2 + 82678 0.66 0.948633
Target:  5'- cGCACGUGcCGCcaAGGccGUGCGCGAc -3'
miRNA:   3'- -CGUGCGCcGCGuaUUUauCGCGCGCU- -5'
22855 3' -53.5 NC_005137.2 + 99363 0.66 0.948633
Target:  5'- -aGCGUGGuCGCGUcc---GCGCGCGu -3'
miRNA:   3'- cgUGCGCC-GCGUAuuuauCGCGCGCu -5'
22855 3' -53.5 NC_005137.2 + 28046 0.66 0.944147
Target:  5'- -aACGUGGCGCGac----GCGCGCu- -3'
miRNA:   3'- cgUGCGCCGCGUauuuauCGCGCGcu -5'
22855 3' -53.5 NC_005137.2 + 103546 0.66 0.944147
Target:  5'- cGCACGuCGcgacgucaauuGCGCGUAcGAgacaAGCGCGUGGg -3'
miRNA:   3'- -CGUGC-GC-----------CGCGUAU-UUa---UCGCGCGCU- -5'
22855 3' -53.5 NC_005137.2 + 130547 0.66 0.944147
Target:  5'- cGC-CGCGGCgGCAUAGAUucggAGCG-GuCGGa -3'
miRNA:   3'- -CGuGCGCCG-CGUAUUUA----UCGCgC-GCU- -5'
22855 3' -53.5 NC_005137.2 + 74261 0.66 0.944147
Target:  5'- uGCACGCGuGUuuGCAacUGAcaaGGCGCGCa- -3'
miRNA:   3'- -CGUGCGC-CG--CGU--AUUua-UCGCGCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.