miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22856 5' -56 NC_005137.2 + 31464 0.69 0.752539
Target:  5'- aCaACGCGuuGUCUU-GUG-CGCGGCa -3'
miRNA:   3'- aGcUGCGCggCAGAGuUACaGCGCCG- -5'
22856 5' -56 NC_005137.2 + 97431 0.69 0.742899
Target:  5'- -gGGCGCGgCGcaCUCAaaaacAUGUCGgGGCa -3'
miRNA:   3'- agCUGCGCgGCa-GAGU-----UACAGCgCCG- -5'
22856 5' -56 NC_005137.2 + 63461 0.69 0.762074
Target:  5'- cUCGGCGCG-CGUUU--GUGccgccUCGCGGCg -3'
miRNA:   3'- -AGCUGCGCgGCAGAguUAC-----AGCGCCG- -5'
22856 5' -56 NC_005137.2 + 100531 0.69 0.739016
Target:  5'- gUCGACGCGCCGcCUCAAcucuauaaaacgaGcCGCGcaGCa -3'
miRNA:   3'- -AGCUGCGCGGCaGAGUUa------------CaGCGC--CG- -5'
22856 5' -56 NC_005137.2 + 113693 0.7 0.693437
Target:  5'- gCGACGCGCaCGUCgcacagcgcgUCAAUGUCcUGcGCa -3'
miRNA:   3'- aGCUGCGCG-GCAG----------AGUUACAGcGC-CG- -5'
22856 5' -56 NC_005137.2 + 111169 0.7 0.693437
Target:  5'- aCGG-GCGgCGgaggCUUuGUGUCGCGGCg -3'
miRNA:   3'- aGCUgCGCgGCa---GAGuUACAGCGCCG- -5'
22856 5' -56 NC_005137.2 + 14114 0.7 0.693437
Target:  5'- gUGACG-GCCGUUgUCAA-GUCGCGGg -3'
miRNA:   3'- aGCUGCgCGGCAG-AGUUaCAGCGCCg -5'
22856 5' -56 NC_005137.2 + 100049 0.7 0.703468
Target:  5'- gCGGCGCGCgGcgcgUUCAgcaugcuuuGUGcCGCGGCg -3'
miRNA:   3'- aGCUGCGCGgCa---GAGU---------UACaGCGCCG- -5'
22856 5' -56 NC_005137.2 + 51669 0.71 0.632491
Target:  5'- aCGgguGCGUGUCGUCgcugacgCAGuUGUUGCGGCa -3'
miRNA:   3'- aGC---UGCGCGGCAGa------GUU-ACAGCGCCG- -5'
22856 5' -56 NC_005137.2 + 123052 0.71 0.622285
Target:  5'- -gGGC-CGCCGg-UCGAgGUCGCGGCg -3'
miRNA:   3'- agCUGcGCGGCagAGUUaCAGCGCCG- -5'
22856 5' -56 NC_005137.2 + 73432 0.73 0.551453
Target:  5'- gCGGCGCGCUGggCUCGAcgcGUucuaaaCGCGGCg -3'
miRNA:   3'- aGCUGCGCGGCa-GAGUUa--CA------GCGCCG- -5'
22856 5' -56 NC_005137.2 + 85250 0.73 0.541503
Target:  5'- aUCGGCGuCGCUGUCgUCAGcggcguaacccuUGgCGCGGCu -3'
miRNA:   3'- -AGCUGC-GCGGCAG-AGUU------------ACaGCGCCG- -5'
22856 5' -56 NC_005137.2 + 5248 0.73 0.531614
Target:  5'- --cACGCGCCG-CUCGAaacgCGCGGCg -3'
miRNA:   3'- agcUGCGCGGCaGAGUUaca-GCGCCG- -5'
22856 5' -56 NC_005137.2 + 125929 1.13 0.001601
Target:  5'- gUCGACGCGCCGUCUCAAUGUCGCGGCg -3'
miRNA:   3'- -AGCUGCGCGGCAGAGUUACAGCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.