miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22856 5' -56 NC_005137.2 + 73542 0.69 0.771494
Target:  5'- aCGGCGuCGUgGcCUCGuUG-CGCGGCg -3'
miRNA:   3'- aGCUGC-GCGgCaGAGUuACaGCGCCG- -5'
22856 5' -56 NC_005137.2 + 85250 0.73 0.541503
Target:  5'- aUCGGCGuCGCUGUCgUCAGcggcguaacccuUGgCGCGGCu -3'
miRNA:   3'- -AGCUGC-GCGGCAG-AGUU------------ACaGCGCCG- -5'
22856 5' -56 NC_005137.2 + 90496 0.67 0.849673
Target:  5'- cUCGAUuauaGCGCUgcuaGUUUCAAUGUCGCa-- -3'
miRNA:   3'- -AGCUG----CGCGG----CAGAGUUACAGCGccg -5'
22856 5' -56 NC_005137.2 + 97431 0.69 0.742899
Target:  5'- -gGGCGCGgCGcaCUCAaaaacAUGUCGgGGCa -3'
miRNA:   3'- agCUGCGCgGCa-GAGU-----UACAGCgCCG- -5'
22856 5' -56 NC_005137.2 + 100049 0.7 0.703468
Target:  5'- gCGGCGCGCgGcgcgUUCAgcaugcuuuGUGcCGCGGCg -3'
miRNA:   3'- aGCUGCGCGgCa---GAGU---------UACaGCGCCG- -5'
22856 5' -56 NC_005137.2 + 100531 0.69 0.739016
Target:  5'- gUCGACGCGCCGcCUCAAcucuauaaaacgaGcCGCGcaGCa -3'
miRNA:   3'- -AGCUGCGCGGCaGAGUUa------------CaGCGC--CG- -5'
22856 5' -56 NC_005137.2 + 109397 0.66 0.893349
Target:  5'- uUCGACGCGCUGggugUUCAAagugacUGaCGCGuuGCa -3'
miRNA:   3'- -AGCUGCGCGGCa---GAGUU------ACaGCGC--CG- -5'
22856 5' -56 NC_005137.2 + 111169 0.7 0.693437
Target:  5'- aCGG-GCGgCGgaggCUUuGUGUCGCGGCg -3'
miRNA:   3'- aGCUgCGCgGCa---GAGuUACAGCGCCG- -5'
22856 5' -56 NC_005137.2 + 113693 0.7 0.693437
Target:  5'- gCGACGCGCaCGUCgcacagcgcgUCAAUGUCcUGcGCa -3'
miRNA:   3'- aGCUGCGCG-GCAG----------AGUUACAGcGC-CG- -5'
22856 5' -56 NC_005137.2 + 114807 0.67 0.841672
Target:  5'- gCGcACGuCGUCGUCgucaGAUGUCauagGCGGCu -3'
miRNA:   3'- aGC-UGC-GCGGCAGag--UUACAG----CGCCG- -5'
22856 5' -56 NC_005137.2 + 118312 0.68 0.825109
Target:  5'- gUUGGCGCGCCGUUcCGAcG-CGCuGCu -3'
miRNA:   3'- -AGCUGCGCGGCAGaGUUaCaGCGcCG- -5'
22856 5' -56 NC_005137.2 + 123052 0.71 0.622285
Target:  5'- -gGGC-CGCCGg-UCGAgGUCGCGGCg -3'
miRNA:   3'- agCUGcGCGGCagAGUUaCAGCGCCG- -5'
22856 5' -56 NC_005137.2 + 125929 1.13 0.001601
Target:  5'- gUCGACGCGCCGUCUCAAUGUCGCGGCg -3'
miRNA:   3'- -AGCUGCGCGGCAGAGUUACAGCGCCG- -5'
22856 5' -56 NC_005137.2 + 129980 0.66 0.906136
Target:  5'- cCGACuccagaagguaCGuuGUCUCGcgG-CGCGGCu -3'
miRNA:   3'- aGCUGc----------GCggCAGAGUuaCaGCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.