miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22862 3' -54.2 NC_005137.2 + 10862 0.67 0.891374
Target:  5'- cACACGcuGUcGUAACGGCUGCAC-ACg- -3'
miRNA:   3'- -UGUGC--UAaCGUUGCCGACGUGgUGgu -5'
22862 3' -54.2 NC_005137.2 + 13266 0.67 0.8695
Target:  5'- uAUAgGccgGCGugGGUaGCACCGCCAg -3'
miRNA:   3'- -UGUgCuaaCGUugCCGaCGUGGUGGU- -5'
22862 3' -54.2 NC_005137.2 + 20383 0.66 0.933781
Target:  5'- gGCGCGuuugUGC-ACGGCcGuCACCACgGa -3'
miRNA:   3'- -UGUGCua--ACGuUGCCGaC-GUGGUGgU- -5'
22862 3' -54.2 NC_005137.2 + 22443 0.7 0.723476
Target:  5'- -gGCGAUuuggGCAAcgugcgcuccguCGGCUGCACCGCg- -3'
miRNA:   3'- ugUGCUAa---CGUU------------GCCGACGUGGUGgu -5'
22862 3' -54.2 NC_005137.2 + 28062 0.67 0.88432
Target:  5'- cGCugGGaUGCGccagACGGCUGUACaCGCa- -3'
miRNA:   3'- -UGugCUaACGU----UGCCGACGUG-GUGgu -5'
22862 3' -54.2 NC_005137.2 + 31698 0.68 0.845581
Target:  5'- --uUGAUgGCAGCGGCccGC-CCACCAu -3'
miRNA:   3'- uguGCUAaCGUUGCCGa-CGuGGUGGU- -5'
22862 3' -54.2 NC_005137.2 + 32554 0.74 0.504792
Target:  5'- cAUACGGccgUGCAcGCGGCUGCuugcgcuuuaACCGCCAa -3'
miRNA:   3'- -UGUGCUa--ACGU-UGCCGACG----------UGGUGGU- -5'
22862 3' -54.2 NC_005137.2 + 33728 0.67 0.88432
Target:  5'- aACACGuuggcuacUGCGGCGGC-GUugUACCGa -3'
miRNA:   3'- -UGUGCua------ACGUUGCCGaCGugGUGGU- -5'
22862 3' -54.2 NC_005137.2 + 36529 0.66 0.922932
Target:  5'- cGCACG--UGCAcgACGGCaucGUugACCACCAu -3'
miRNA:   3'- -UGUGCuaACGU--UGCCGa--CG--UGGUGGU- -5'
22862 3' -54.2 NC_005137.2 + 39811 0.69 0.819802
Target:  5'- aACACGcgUGCAACcaaacGCcGCGCCACgGa -3'
miRNA:   3'- -UGUGCuaACGUUGc----CGaCGUGGUGgU- -5'
22862 3' -54.2 NC_005137.2 + 40295 0.68 0.861746
Target:  5'- uCACG-UUGC--UGGCacGCACCACCAg -3'
miRNA:   3'- uGUGCuAACGuuGCCGa-CGUGGUGGU- -5'
22862 3' -54.2 NC_005137.2 + 40825 0.72 0.618724
Target:  5'- aGCGCGuuugugagaAUUGUAACGcGUUGCACgCGCCAa -3'
miRNA:   3'- -UGUGC---------UAACGUUGC-CGACGUG-GUGGU- -5'
22862 3' -54.2 NC_005137.2 + 42246 0.66 0.933781
Target:  5'- aGCACGcGUUGCcucucaacuacAACGaGCUGCGucCCAUCAa -3'
miRNA:   3'- -UGUGC-UAACG-----------UUGC-CGACGU--GGUGGU- -5'
22862 3' -54.2 NC_005137.2 + 50625 0.69 0.792384
Target:  5'- uACACGccgGCAcGgGGCUGCAgCACCu -3'
miRNA:   3'- -UGUGCuaaCGU-UgCCGACGUgGUGGu -5'
22862 3' -54.2 NC_005137.2 + 57411 0.68 0.853771
Target:  5'- -aACGAcuucgUUGCGcCGGCUGCAaaGCCGu -3'
miRNA:   3'- ugUGCU-----AACGUuGCCGACGUggUGGU- -5'
22862 3' -54.2 NC_005137.2 + 59630 0.69 0.801691
Target:  5'- aGCGCGccacuuuUUGCAACGGCa-CGCCGCUg -3'
miRNA:   3'- -UGUGCu------AACGUUGCCGacGUGGUGGu -5'
22862 3' -54.2 NC_005137.2 + 59884 0.67 0.88432
Target:  5'- aAUACGAggUGCAACaGCuuauagaaUGgGCCGCCAa -3'
miRNA:   3'- -UGUGCUa-ACGUUGcCG--------ACgUGGUGGU- -5'
22862 3' -54.2 NC_005137.2 + 61832 0.73 0.545446
Target:  5'- aGCGCGucuUUGCcgAGCGuGuCUGCGCCACCGu -3'
miRNA:   3'- -UGUGCu--AACG--UUGC-C-GACGUGGUGGU- -5'
22862 3' -54.2 NC_005137.2 + 65583 0.69 0.782924
Target:  5'- uACACGg--GCAACGGCauuggGUGCCGCUc -3'
miRNA:   3'- -UGUGCuaaCGUUGCCGa----CGUGGUGGu -5'
22862 3' -54.2 NC_005137.2 + 72336 0.76 0.418728
Target:  5'- aACGCGaAUUGC-GCGaGCUGCGCCGCUc -3'
miRNA:   3'- -UGUGC-UAACGuUGC-CGACGUGGUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.