miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22864 3' -51 NC_005137.2 + 106403 1.06 0.008996
Target:  5'- cCAACGCGCAACAUGCAACACGCUGAAc -3'
miRNA:   3'- -GUUGCGCGUUGUACGUUGUGCGACUU- -5'
22864 3' -51 NC_005137.2 + 119738 0.82 0.301899
Target:  5'- uCAGCGCGUAGCGgacGuCAGCGCGCUGGAg -3'
miRNA:   3'- -GUUGCGCGUUGUa--C-GUUGUGCGACUU- -5'
22864 3' -51 NC_005137.2 + 30801 0.8 0.349167
Target:  5'- uCGACGCGCAcCA-GCAACACGUUGGGa -3'
miRNA:   3'- -GUUGCGCGUuGUaCGUUGUGCGACUU- -5'
22864 3' -51 NC_005137.2 + 93570 0.76 0.594451
Target:  5'- gUggUGCGCGGCG-GCAAuCACGCUGAu -3'
miRNA:   3'- -GuuGCGCGUUGUaCGUU-GUGCGACUu -5'
22864 3' -51 NC_005137.2 + 32373 0.76 0.572782
Target:  5'- cCAACGCGCAGCaAUGUAACAaauUGUUGAc -3'
miRNA:   3'- -GUUGCGCGUUG-UACGUUGU---GCGACUu -5'
22864 3' -51 NC_005137.2 + 26301 0.75 0.649015
Target:  5'- -uACGCGUAcaACG-GCGGCGCGCUGGAc -3'
miRNA:   3'- guUGCGCGU--UGUaCGUUGUGCGACUU- -5'
22864 3' -51 NC_005137.2 + 7151 0.74 0.703184
Target:  5'- aAAUGCGCGGCGUGUAagccGCGCGCUc-- -3'
miRNA:   3'- gUUGCGCGUUGUACGU----UGUGCGAcuu -5'
22864 3' -51 NC_005137.2 + 46094 0.73 0.713856
Target:  5'- gGACGCG--ACGUGCAACACGCa--- -3'
miRNA:   3'- gUUGCGCguUGUACGUUGUGCGacuu -5'
22864 3' -51 NC_005137.2 + 24603 0.72 0.765804
Target:  5'- uCAGCGUGUuGCAUGUuGCGCGUUGGc -3'
miRNA:   3'- -GUUGCGCGuUGUACGuUGUGCGACUu -5'
22864 3' -51 NC_005137.2 + 31590 0.72 0.775832
Target:  5'- aCAuCGCGacaAugAUGCAacGCACGCUGGAu -3'
miRNA:   3'- -GUuGCGCg--UugUACGU--UGUGCGACUU- -5'
22864 3' -51 NC_005137.2 + 40109 0.72 0.795437
Target:  5'- -cGCGCGCAACGUGCu-UACGCa--- -3'
miRNA:   3'- guUGCGCGUUGUACGuuGUGCGacuu -5'
22864 3' -51 NC_005137.2 + 35518 0.72 0.785713
Target:  5'- gCGAUGCGCc-CGUGCGGCGCGCa--- -3'
miRNA:   3'- -GUUGCGCGuuGUACGUUGUGCGacuu -5'
22864 3' -51 NC_005137.2 + 12212 0.71 0.814371
Target:  5'- -cACGCGC-GCAUGUAACGCuucaucGCUGGAu -3'
miRNA:   3'- guUGCGCGuUGUACGUUGUG------CGACUU- -5'
22864 3' -51 NC_005137.2 + 2485 0.71 0.82356
Target:  5'- -uAUGCGCcGCGUGCGGCAuggUGCUGGu -3'
miRNA:   3'- guUGCGCGuUGUACGUUGU---GCGACUu -5'
22864 3' -51 NC_005137.2 + 30939 0.71 0.8499
Target:  5'- -cGCGCGCcGCG-GCAcaaaGCAUGCUGAAc -3'
miRNA:   3'- guUGCGCGuUGUaCGU----UGUGCGACUU- -5'
22864 3' -51 NC_005137.2 + 35239 0.7 0.896316
Target:  5'- aAACGuCcCGACGUGCGACGCccGCUGAu -3'
miRNA:   3'- gUUGC-GcGUUGUACGUUGUG--CGACUu -5'
22864 3' -51 NC_005137.2 + 73411 0.7 0.889206
Target:  5'- aAACGCuGCugcuaucuGCuUGCGGCGCGCUGGg -3'
miRNA:   3'- gUUGCG-CGu-------UGuACGUUGUGCGACUu -5'
22864 3' -51 NC_005137.2 + 31450 0.7 0.866349
Target:  5'- gGACGUGUcggAACAaGCgAGCGCGCUGAc -3'
miRNA:   3'- gUUGCGCG---UUGUaCG-UUGUGCGACUu -5'
22864 3' -51 NC_005137.2 + 129002 0.7 0.874217
Target:  5'- -uGCGcCGCAGCGUGCAcgagcuguGCACGCg--- -3'
miRNA:   3'- guUGC-GCGUUGUACGU--------UGUGCGacuu -5'
22864 3' -51 NC_005137.2 + 11264 0.7 0.881838
Target:  5'- cCAGCgGCGCuGACGUccGCuACGCGCUGAc -3'
miRNA:   3'- -GUUG-CGCG-UUGUA--CGuUGUGCGACUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.