miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22866 5' -56.1 NC_005137.2 + 23 0.69 0.738093
Target:  5'- aGCGGCGCGUcagGCGCaaacuccuucacuUUGaacACGAGCGa -3'
miRNA:   3'- aCGCUGCGCG---UGCG-------------AACa--UGCUCGCa -5'
22866 5' -56.1 NC_005137.2 + 762 0.72 0.555087
Target:  5'- gGCGGCG-GCACGUUUGgcgGCGgaGGCGg -3'
miRNA:   3'- aCGCUGCgCGUGCGAACa--UGC--UCGCa -5'
22866 5' -56.1 NC_005137.2 + 1196 0.67 0.831333
Target:  5'- gGUGAagGCGCuguaaACGCUUGaGCGGGUGg -3'
miRNA:   3'- aCGCUg-CGCG-----UGCGAACaUGCUCGCa -5'
22866 5' -56.1 NC_005137.2 + 1229 0.67 0.831333
Target:  5'- gGUGAagGCGCuacaaACGCUUGaGCGGGUGg -3'
miRNA:   3'- aCGCUg-CGCG-----UGCGAACaUGCUCGCa -5'
22866 5' -56.1 NC_005137.2 + 1262 0.67 0.831333
Target:  5'- gGUGAagGCGCuacaaACGCUUGaGCGGGUGg -3'
miRNA:   3'- aCGCUg-CGCG-----UGCGAACaUGCUCGCa -5'
22866 5' -56.1 NC_005137.2 + 3860 0.68 0.758592
Target:  5'- gGCGAuUGCGCugGCUUucaUACgGAGUGUa -3'
miRNA:   3'- aCGCU-GCGCGugCGAAc--AUG-CUCGCA- -5'
22866 5' -56.1 NC_005137.2 + 11306 0.67 0.80521
Target:  5'- cGgGAUGCGUACGUgcuaagcugUGUGCGcGCGc -3'
miRNA:   3'- aCgCUGCGCGUGCGa--------ACAUGCuCGCa -5'
22866 5' -56.1 NC_005137.2 + 14747 0.67 0.847836
Target:  5'- cGUGACGCaGCACGCgu-UGCaaauAGCGUa -3'
miRNA:   3'- aCGCUGCG-CGUGCGaacAUGc---UCGCA- -5'
22866 5' -56.1 NC_005137.2 + 15259 0.72 0.544982
Target:  5'- cGCGGCGCGCACGU---UGCGuugcaccuuGGCGUc -3'
miRNA:   3'- aCGCUGCGCGUGCGaacAUGC---------UCGCA- -5'
22866 5' -56.1 NC_005137.2 + 16588 0.66 0.885485
Target:  5'- aUG-GAUGUGCGCGCaUUGaUGCGcGGCGg -3'
miRNA:   3'- -ACgCUGCGCGUGCG-AAC-AUGC-UCGCa -5'
22866 5' -56.1 NC_005137.2 + 20341 0.68 0.768182
Target:  5'- gGCucCGCGCACGCccGUcACGGGCa- -3'
miRNA:   3'- aCGcuGCGCGUGCGaaCA-UGCUCGca -5'
22866 5' -56.1 NC_005137.2 + 20435 0.71 0.626961
Target:  5'- aUG-GGCGCGCcaagACGCagGUGCGGGCGc -3'
miRNA:   3'- -ACgCUGCGCG----UGCGaaCAUGCUCGCa -5'
22866 5' -56.1 NC_005137.2 + 20969 0.68 0.758592
Target:  5'- cUGCGGCGCGCguuuugccGCGCUUGcacgcaaACGGGUu- -3'
miRNA:   3'- -ACGCUGCGCG--------UGCGAACa------UGCUCGca -5'
22866 5' -56.1 NC_005137.2 + 26313 0.66 0.878392
Target:  5'- gGCGGCGCGCugGaCUcuaacACGcGCGUc -3'
miRNA:   3'- aCGCUGCGCGugC-GAaca--UGCuCGCA- -5'
22866 5' -56.1 NC_005137.2 + 26532 0.67 0.8228
Target:  5'- aGUGugGCGCGCGUacggcaaguUUGUuaGCGguAGCGa -3'
miRNA:   3'- aCGCugCGCGUGCG---------AACA--UGC--UCGCa -5'
22866 5' -56.1 NC_005137.2 + 26669 0.69 0.739079
Target:  5'- -aCGACGaCGCACGCacGUGCGAaCGUu -3'
miRNA:   3'- acGCUGC-GCGUGCGaaCAUGCUcGCA- -5'
22866 5' -56.1 NC_005137.2 + 30749 0.7 0.637305
Target:  5'- cGCGACGCGCGCcc--GUGCGuuGCGg -3'
miRNA:   3'- aCGCUGCGCGUGcgaaCAUGCu-CGCa -5'
22866 5' -56.1 NC_005137.2 + 31252 0.66 0.86354
Target:  5'- cGCGuCGUGCGCGCUcaacuCGGGCc- -3'
miRNA:   3'- aCGCuGCGCGUGCGAacau-GCUCGca -5'
22866 5' -56.1 NC_005137.2 + 32994 0.73 0.505222
Target:  5'- -cCGACGUGCACGCUggccacuugGCGGGCGc -3'
miRNA:   3'- acGCUGCGCGUGCGAaca------UGCUCGCa -5'
22866 5' -56.1 NC_005137.2 + 34635 0.75 0.394748
Target:  5'- gGCGGuuUGCGCGCcgUGUGCGAGCGa -3'
miRNA:   3'- aCGCUgcGCGUGCGa-ACAUGCUCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.