miRNA display CGI


Results 21 - 40 of 61 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22866 5' -56.1 NC_005137.2 + 35529 0.66 0.855792
Target:  5'- gUGCGGCGCGCAUcCgaccgGUACGuuGCa- -3'
miRNA:   3'- -ACGCUGCGCGUGcGaa---CAUGCu-CGca -5'
22866 5' -56.1 NC_005137.2 + 42203 0.68 0.748888
Target:  5'- gGaCGGCGaCGCGCGCUacaACGAGUGg -3'
miRNA:   3'- aC-GCUGC-GCGUGCGAacaUGCUCGCa -5'
22866 5' -56.1 NC_005137.2 + 42671 0.66 0.855792
Target:  5'- cGCGACGCcaaGCGCGCaaucgACGGGUa- -3'
miRNA:   3'- aCGCUGCG---CGUGCGaaca-UGCUCGca -5'
22866 5' -56.1 NC_005137.2 + 46097 0.73 0.505222
Target:  5'- cGCGACGUGCaacACGC----ACGAGCGUg -3'
miRNA:   3'- aCGCUGCGCG---UGCGaacaUGCUCGCA- -5'
22866 5' -56.1 NC_005137.2 + 48782 0.71 0.626961
Target:  5'- cGCGGCGcCGCACaGCgUGUGCG-GCa- -3'
miRNA:   3'- aCGCUGC-GCGUG-CGaACAUGCuCGca -5'
22866 5' -56.1 NC_005137.2 + 49214 0.66 0.878392
Target:  5'- cGCGACGCGCgACGCaaaaacucuaGUGCGguucgcAGUGUu -3'
miRNA:   3'- aCGCUGCGCG-UGCGaa--------CAUGC------UCGCA- -5'
22866 5' -56.1 NC_005137.2 + 49963 0.66 0.871076
Target:  5'- cGCGAUGaGCACuCUUGaUGCGAGUa- -3'
miRNA:   3'- aCGCUGCgCGUGcGAAC-AUGCUCGca -5'
22866 5' -56.1 NC_005137.2 + 56104 0.67 0.804314
Target:  5'- uUGUGACGCGCACGUUUcaauuuuuuaacaGUuuGuGCGa -3'
miRNA:   3'- -ACGCUGCGCGUGCGAA-------------CAugCuCGCa -5'
22866 5' -56.1 NC_005137.2 + 56315 0.7 0.682659
Target:  5'- aGCGACGCGCAaauuaaacgugcacgUGCUUGccuguucgACGAcGCGg -3'
miRNA:   3'- aCGCUGCGCGU---------------GCGAACa-------UGCU-CGCa -5'
22866 5' -56.1 NC_005137.2 + 56497 0.66 0.885485
Target:  5'- cGCGuCGUGU-CGCgUGUACG-GCGUu -3'
miRNA:   3'- aCGCuGCGCGuGCGaACAUGCuCGCA- -5'
22866 5' -56.1 NC_005137.2 + 67231 0.67 0.839681
Target:  5'- cGCGACcuuCGCACGgUUcUACGGGCa- -3'
miRNA:   3'- aCGCUGc--GCGUGCgAAcAUGCUCGca -5'
22866 5' -56.1 NC_005137.2 + 67703 0.68 0.768182
Target:  5'- aGUGAgG-GCGCGCgUUGUgcccGCGAGCGa -3'
miRNA:   3'- aCGCUgCgCGUGCG-AACA----UGCUCGCa -5'
22866 5' -56.1 NC_005137.2 + 68800 0.66 0.861238
Target:  5'- cGCGGCaGCGCAaacuCGCUUGUuaaaacuaaagaagACGccAGCGg -3'
miRNA:   3'- aCGCUG-CGCGU----GCGAACA--------------UGC--UCGCa -5'
22866 5' -56.1 NC_005137.2 + 71020 0.66 0.885485
Target:  5'- cGCGGCGCcauaguauuuuGCAuaaUGCUagGUACGGGCa- -3'
miRNA:   3'- aCGCUGCG-----------CGU---GCGAa-CAUGCUCGca -5'
22866 5' -56.1 NC_005137.2 + 71383 0.73 0.495473
Target:  5'- gGCGACGCG-GCGUUUG-ACGAGCc- -3'
miRNA:   3'- aCGCUGCGCgUGCGAACaUGCUCGca -5'
22866 5' -56.1 NC_005137.2 + 72353 0.66 0.855005
Target:  5'- cUGCGccgcuccGCGUGCACGCUagUGUACacGCGc -3'
miRNA:   3'- -ACGC-------UGCGCGUGCGA--ACAUGcuCGCa -5'
22866 5' -56.1 NC_005137.2 + 72804 0.66 0.885485
Target:  5'- gGCGGCGCGCGCuGCcgucuugaUGUuuagcauguaaAUGAGCGc -3'
miRNA:   3'- aCGCUGCGCGUG-CGa-------ACA-----------UGCUCGCa -5'
22866 5' -56.1 NC_005137.2 + 73430 0.66 0.86354
Target:  5'- uUGCGGCGCGCugGgCU----CGAcGCGUu -3'
miRNA:   3'- -ACGCUGCGCGugC-GAacauGCU-CGCA- -5'
22866 5' -56.1 NC_005137.2 + 74469 0.71 0.61662
Target:  5'- uUGCGcAC-CGUGCGUUUGUACGGcGCGUu -3'
miRNA:   3'- -ACGC-UGcGCGUGCGAACAUGCU-CGCA- -5'
22866 5' -56.1 NC_005137.2 + 75967 0.69 0.709119
Target:  5'- cGUGACGCgGCGCGCguugGUGCacGGCGc -3'
miRNA:   3'- aCGCUGCG-CGUGCGaa--CAUGc-UCGCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.