Results 21 - 40 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22866 | 5' | -56.1 | NC_005137.2 | + | 1262 | 0.67 | 0.831333 |
Target: 5'- gGUGAagGCGCuacaaACGCUUGaGCGGGUGg -3' miRNA: 3'- aCGCUg-CGCG-----UGCGAACaUGCUCGCa -5' |
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22866 | 5' | -56.1 | NC_005137.2 | + | 84894 | 0.67 | 0.80521 |
Target: 5'- gGUGACGCGUgguccACGCUcGUGCGuguuGCa- -3' miRNA: 3'- aCGCUGCGCG-----UGCGAaCAUGCu---CGca -5' |
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22866 | 5' | -56.1 | NC_005137.2 | + | 91713 | 0.67 | 0.821937 |
Target: 5'- -aCGACGCacuuuuuGCGCGCgacgUGUACGccAGCGa -3' miRNA: 3'- acGCUGCG-------CGUGCGa---ACAUGC--UCGCa -5' |
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22866 | 5' | -56.1 | NC_005137.2 | + | 1196 | 0.67 | 0.831333 |
Target: 5'- gGUGAagGCGCuguaaACGCUUGaGCGGGUGg -3' miRNA: 3'- aCGCUg-CGCG-----UGCGAACaUGCUCGCa -5' |
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22866 | 5' | -56.1 | NC_005137.2 | + | 1229 | 0.67 | 0.831333 |
Target: 5'- gGUGAagGCGCuacaaACGCUUGaGCGGGUGg -3' miRNA: 3'- aCGCUg-CGCG-----UGCGAACaUGCUCGCa -5' |
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22866 | 5' | -56.1 | NC_005137.2 | + | 14747 | 0.67 | 0.847836 |
Target: 5'- cGUGACGCaGCACGCgu-UGCaaauAGCGUa -3' miRNA: 3'- aCGCUGCG-CGUGCGaacAUGc---UCGCA- -5' |
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22866 | 5' | -56.1 | NC_005137.2 | + | 67231 | 0.67 | 0.839681 |
Target: 5'- cGCGACcuuCGCACGgUUcUACGGGCa- -3' miRNA: 3'- aCGCUGc--GCGUGCgAAcAUGCUCGca -5' |
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22866 | 5' | -56.1 | NC_005137.2 | + | 20969 | 0.68 | 0.758592 |
Target: 5'- cUGCGGCGCGCguuuugccGCGCUUGcacgcaaACGGGUu- -3' miRNA: 3'- -ACGCUGCGCG--------UGCGAACa------UGCUCGca -5' |
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22866 | 5' | -56.1 | NC_005137.2 | + | 98004 | 0.68 | 0.790675 |
Target: 5'- gUGCGcccgccaaguggccaGCGUGCACGUcgGgcgcUGCGAGCGg -3' miRNA: 3'- -ACGC---------------UGCGCGUGCGaaC----AUGCUCGCa -5' |
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22866 | 5' | -56.1 | NC_005137.2 | + | 110645 | 0.68 | 0.757626 |
Target: 5'- cGcCGACgGCGuUugGCUUGUgcccgugACGGGCGUg -3' miRNA: 3'- aC-GCUG-CGC-GugCGAACA-------UGCUCGCA- -5' |
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22866 | 5' | -56.1 | NC_005137.2 | + | 100048 | 0.68 | 0.748888 |
Target: 5'- cGCGGCGCGCGgCGCguucagcaugcuUUGUGCcgcGGCGc -3' miRNA: 3'- aCGCUGCGCGU-GCG------------AACAUGc--UCGCa -5' |
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22866 | 5' | -56.1 | NC_005137.2 | + | 42203 | 0.68 | 0.748888 |
Target: 5'- gGaCGGCGaCGCGCGCUacaACGAGUGg -3' miRNA: 3'- aC-GCUGC-GCGUGCGAacaUGCUCGCa -5' |
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22866 | 5' | -56.1 | NC_005137.2 | + | 84942 | 0.68 | 0.786981 |
Target: 5'- aGCG--GCGCACGCU-GUGC-AGCGg -3' miRNA: 3'- aCGCugCGCGUGCGAaCAUGcUCGCa -5' |
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22866 | 5' | -56.1 | NC_005137.2 | + | 67703 | 0.68 | 0.768182 |
Target: 5'- aGUGAgG-GCGCGCgUUGUgcccGCGAGCGa -3' miRNA: 3'- aCGCUgCgCGUGCG-AACA----UGCUCGCa -5' |
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22866 | 5' | -56.1 | NC_005137.2 | + | 20341 | 0.68 | 0.768182 |
Target: 5'- gGCucCGCGCACGCccGUcACGGGCa- -3' miRNA: 3'- aCGcuGCGCGUGCGaaCA-UGCUCGca -5' |
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22866 | 5' | -56.1 | NC_005137.2 | + | 3860 | 0.68 | 0.758592 |
Target: 5'- gGCGAuUGCGCugGCUUucaUACgGAGUGUa -3' miRNA: 3'- aCGCU-GCGCGugCGAAc--AUG-CUCGCA- -5' |
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22866 | 5' | -56.1 | NC_005137.2 | + | 113691 | 0.69 | 0.739079 |
Target: 5'- cUGCGACGCGCACGUcgcacaGcGCGUc -3' miRNA: 3'- -ACGCUGCGCGUGCGaacaugCuCGCA- -5' |
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22866 | 5' | -56.1 | NC_005137.2 | + | 26669 | 0.69 | 0.739079 |
Target: 5'- -aCGACGaCGCACGCacGUGCGAaCGUu -3' miRNA: 3'- acGCUGC-GCGUGCGaaCAUGCUcGCA- -5' |
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22866 | 5' | -56.1 | NC_005137.2 | + | 116850 | 0.69 | 0.739079 |
Target: 5'- --gGACGCGUACGUggaUugGAGCGg -3' miRNA: 3'- acgCUGCGCGUGCGaacAugCUCGCa -5' |
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22866 | 5' | -56.1 | NC_005137.2 | + | 23 | 0.69 | 0.738093 |
Target: 5'- aGCGGCGCGUcagGCGCaaacuccuucacuUUGaacACGAGCGa -3' miRNA: 3'- aCGCUGCGCG---UGCG-------------AACa--UGCUCGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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