miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22866 5' -56.1 NC_005137.2 + 130947 0.73 0.48581
Target:  5'- cGaCGACGCGCGCGCUUuuaUACaAGCGg -3'
miRNA:   3'- aC-GCUGCGCGUGCGAAc--AUGcUCGCa -5'
22866 5' -56.1 NC_005137.2 + 71383 0.73 0.495473
Target:  5'- gGCGACGCG-GCGUUUG-ACGAGCc- -3'
miRNA:   3'- aCGCUGCGCgUGCGAACaUGCUCGca -5'
22866 5' -56.1 NC_005137.2 + 46097 0.73 0.505222
Target:  5'- cGCGACGUGCaacACGC----ACGAGCGUg -3'
miRNA:   3'- aCGCUGCGCG---UGCGaacaUGCUCGCA- -5'
22866 5' -56.1 NC_005137.2 + 96426 0.71 0.606291
Target:  5'- gGCGACGCGCccgccgcguuGCGUUUGcGCGGGUu- -3'
miRNA:   3'- aCGCUGCGCG----------UGCGAACaUGCUCGca -5'
22866 5' -56.1 NC_005137.2 + 117598 0.71 0.61662
Target:  5'- gGCGACGUGUACGC-UGUugauaaGAGCa- -3'
miRNA:   3'- aCGCUGCGCGUGCGaACAug----CUCGca -5'
22866 5' -56.1 NC_005137.2 + 48782 0.71 0.626961
Target:  5'- cGCGGCGcCGCACaGCgUGUGCG-GCa- -3'
miRNA:   3'- aCGCUGC-GCGUG-CGaACAUGCuCGca -5'
22866 5' -56.1 NC_005137.2 + 56315 0.7 0.682659
Target:  5'- aGCGACGCGCAaauuaaacgugcacgUGCUUGccuguucgACGAcGCGg -3'
miRNA:   3'- aCGCUGCGCGU---------------GCGAACa-------UGCU-CGCa -5'
22866 5' -56.1 NC_005137.2 + 75967 0.69 0.709119
Target:  5'- cGUGACGCgGCGCGCguugGUGCacGGCGc -3'
miRNA:   3'- aCGCUGCG-CGUGCGaa--CAUGc-UCGCa -5'
22866 5' -56.1 NC_005137.2 + 23 0.69 0.738093
Target:  5'- aGCGGCGCGUcagGCGCaaacuccuucacuUUGaacACGAGCGa -3'
miRNA:   3'- aCGCUGCGCG---UGCG-------------AACa--UGCUCGCa -5'
22866 5' -56.1 NC_005137.2 + 116850 0.69 0.739079
Target:  5'- --gGACGCGUACGUggaUugGAGCGg -3'
miRNA:   3'- acgCUGCGCGUGCGaacAugCUCGCa -5'
22866 5' -56.1 NC_005137.2 + 56104 0.67 0.804314
Target:  5'- uUGUGACGCGCACGUUUcaauuuuuuaacaGUuuGuGCGa -3'
miRNA:   3'- -ACGCUGCGCGUGCGAA-------------CAugCuCGCa -5'
22866 5' -56.1 NC_005137.2 + 84942 0.68 0.786981
Target:  5'- aGCG--GCGCACGCU-GUGC-AGCGg -3'
miRNA:   3'- aCGCugCGCGUGCGAaCAUGcUCGCa -5'
22866 5' -56.1 NC_005137.2 + 67703 0.68 0.768182
Target:  5'- aGUGAgG-GCGCGCgUUGUgcccGCGAGCGa -3'
miRNA:   3'- aCGCUgCgCGUGCG-AACA----UGCUCGCa -5'
22866 5' -56.1 NC_005137.2 + 20341 0.68 0.768182
Target:  5'- gGCucCGCGCACGCccGUcACGGGCa- -3'
miRNA:   3'- aCGcuGCGCGUGCGaaCA-UGCUCGca -5'
22866 5' -56.1 NC_005137.2 + 3860 0.68 0.758592
Target:  5'- gGCGAuUGCGCugGCUUucaUACgGAGUGUa -3'
miRNA:   3'- aCGCU-GCGCGugCGAAc--AUG-CUCGCA- -5'
22866 5' -56.1 NC_005137.2 + 113691 0.69 0.739079
Target:  5'- cUGCGACGCGCACGUcgcacaGcGCGUc -3'
miRNA:   3'- -ACGCUGCGCGUGCGaacaugCuCGCA- -5'
22866 5' -56.1 NC_005137.2 + 123993 0.69 0.729175
Target:  5'- cGUGACGCGCguGCGCcacgUUGUGCccGGCGa -3'
miRNA:   3'- aCGCUGCGCG--UGCG----AACAUGc-UCGCa -5'
22866 5' -56.1 NC_005137.2 + 30749 0.7 0.637305
Target:  5'- cGCGACGCGCGCcc--GUGCGuuGCGg -3'
miRNA:   3'- aCGCUGCGCGUGcgaaCAUGCu-CGCa -5'
22866 5' -56.1 NC_005137.2 + 20435 0.71 0.626961
Target:  5'- aUG-GGCGCGCcaagACGCagGUGCGGGCGc -3'
miRNA:   3'- -ACgCUGCGCG----UGCGaaCAUGCUCGCa -5'
22866 5' -56.1 NC_005137.2 + 74469 0.71 0.61662
Target:  5'- uUGCGcAC-CGUGCGUUUGUACGGcGCGUu -3'
miRNA:   3'- -ACGC-UGcGCGUGCGAACAUGCU-CGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.