miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22866 5' -56.1 NC_005137.2 + 125033 0.67 0.80521
Target:  5'- gGCGugGCGCAgGCaacGgagcCGGGCGg -3'
miRNA:   3'- aCGCugCGCGUgCGaa-Cau--GCUCGCa -5'
22866 5' -56.1 NC_005137.2 + 23 0.69 0.738093
Target:  5'- aGCGGCGCGUcagGCGCaaacuccuucacuUUGaacACGAGCGa -3'
miRNA:   3'- aCGCUGCGCG---UGCG-------------AACa--UGCUCGCa -5'
22866 5' -56.1 NC_005137.2 + 116850 0.69 0.739079
Target:  5'- --gGACGCGUACGUggaUugGAGCGg -3'
miRNA:   3'- acgCUGCGCGUGCGaacAugCUCGCa -5'
22866 5' -56.1 NC_005137.2 + 26669 0.69 0.739079
Target:  5'- -aCGACGaCGCACGCacGUGCGAaCGUu -3'
miRNA:   3'- acGCUGC-GCGUGCGaaCAUGCUcGCA- -5'
22866 5' -56.1 NC_005137.2 + 42203 0.68 0.748888
Target:  5'- gGaCGGCGaCGCGCGCUacaACGAGUGg -3'
miRNA:   3'- aC-GCUGC-GCGUGCGAacaUGCUCGCa -5'
22866 5' -56.1 NC_005137.2 + 100048 0.68 0.748888
Target:  5'- cGCGGCGCGCGgCGCguucagcaugcuUUGUGCcgcGGCGc -3'
miRNA:   3'- aCGCUGCGCGU-GCG------------AACAUGc--UCGCa -5'
22866 5' -56.1 NC_005137.2 + 110645 0.68 0.757626
Target:  5'- cGcCGACgGCGuUugGCUUGUgcccgugACGGGCGUg -3'
miRNA:   3'- aC-GCUG-CGC-GugCGAACA-------UGCUCGCA- -5'
22866 5' -56.1 NC_005137.2 + 20969 0.68 0.758592
Target:  5'- cUGCGGCGCGCguuuugccGCGCUUGcacgcaaACGGGUu- -3'
miRNA:   3'- -ACGCUGCGCG--------UGCGAACa------UGCUCGca -5'
22866 5' -56.1 NC_005137.2 + 98004 0.68 0.790675
Target:  5'- gUGCGcccgccaaguggccaGCGUGCACGUcgGgcgcUGCGAGCGg -3'
miRNA:   3'- -ACGC---------------UGCGCGUGCGaaC----AUGCUCGCa -5'
22866 5' -56.1 NC_005137.2 + 75967 0.69 0.709119
Target:  5'- cGUGACGCgGCGCGCguugGUGCacGGCGc -3'
miRNA:   3'- aCGCUGCG-CGUGCGaa--CAUGc-UCGCa -5'
22866 5' -56.1 NC_005137.2 + 56315 0.7 0.682659
Target:  5'- aGCGACGCGCAaauuaaacgugcacgUGCUUGccuguucgACGAcGCGg -3'
miRNA:   3'- aCGCUGCGCGU---------------GCGAACa-------UGCU-CGCa -5'
22866 5' -56.1 NC_005137.2 + 48782 0.71 0.626961
Target:  5'- cGCGGCGcCGCACaGCgUGUGCG-GCa- -3'
miRNA:   3'- aCGCUGC-GCGUG-CGaACAUGCuCGca -5'
22866 5' -56.1 NC_005137.2 + 95344 0.78 0.272676
Target:  5'- cGCGaACGCGCACGUUcgugcaaucccaGUACGGGCGUg -3'
miRNA:   3'- aCGC-UGCGCGUGCGAa-----------CAUGCUCGCA- -5'
22866 5' -56.1 NC_005137.2 + 34635 0.75 0.394748
Target:  5'- gGCGGuuUGCGCGCcgUGUGCGAGCGa -3'
miRNA:   3'- aCGCUgcGCGUGCGa-ACAUGCUCGCa -5'
22866 5' -56.1 NC_005137.2 + 110715 0.74 0.420916
Target:  5'- gUGCGcaacgguguGCGCGCagaGCGCUUGUGCGccgGGCGa -3'
miRNA:   3'- -ACGC---------UGCGCG---UGCGAACAUGC---UCGCa -5'
22866 5' -56.1 NC_005137.2 + 130947 0.73 0.48581
Target:  5'- cGaCGACGCGCGCGCUUuuaUACaAGCGg -3'
miRNA:   3'- aC-GCUGCGCGUGCGAAc--AUGcUCGCa -5'
22866 5' -56.1 NC_005137.2 + 71383 0.73 0.495473
Target:  5'- gGCGACGCG-GCGUUUG-ACGAGCc- -3'
miRNA:   3'- aCGCUGCGCgUGCGAACaUGCUCGca -5'
22866 5' -56.1 NC_005137.2 + 46097 0.73 0.505222
Target:  5'- cGCGACGUGCaacACGC----ACGAGCGUg -3'
miRNA:   3'- aCGCUGCGCG---UGCGaacaUGCUCGCA- -5'
22866 5' -56.1 NC_005137.2 + 96426 0.71 0.606291
Target:  5'- gGCGACGCGCccgccgcguuGCGUUUGcGCGGGUu- -3'
miRNA:   3'- aCGCUGCGCG----------UGCGAACaUGCUCGca -5'
22866 5' -56.1 NC_005137.2 + 117598 0.71 0.61662
Target:  5'- gGCGACGUGUACGC-UGUugauaaGAGCa- -3'
miRNA:   3'- aCGCUGCGCGUGCGaACAug----CUCGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.