miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22866 5' -56.1 NC_005137.2 + 113691 0.69 0.739079
Target:  5'- cUGCGACGCGCACGUcgcacaGcGCGUc -3'
miRNA:   3'- -ACGCUGCGCGUGCGaacaugCuCGCA- -5'
22866 5' -56.1 NC_005137.2 + 84942 0.68 0.786981
Target:  5'- aGCG--GCGCACGCU-GUGC-AGCGg -3'
miRNA:   3'- aCGCugCGCGUGCGAaCAUGcUCGCa -5'
22866 5' -56.1 NC_005137.2 + 84894 0.67 0.80521
Target:  5'- gGUGACGCGUgguccACGCUcGUGCGuguuGCa- -3'
miRNA:   3'- aCGCUGCGCG-----UGCGAaCAUGCu---CGca -5'
22866 5' -56.1 NC_005137.2 + 32994 0.73 0.505222
Target:  5'- -cCGACGUGCACGCUggccacuugGCGGGCGc -3'
miRNA:   3'- acGCUGCGCGUGCGAaca------UGCUCGCa -5'
22866 5' -56.1 NC_005137.2 + 3860 0.68 0.758592
Target:  5'- gGCGAuUGCGCugGCUUucaUACgGAGUGUa -3'
miRNA:   3'- aCGCU-GCGCGugCGAAc--AUG-CUCGCA- -5'
22866 5' -56.1 NC_005137.2 + 91713 0.67 0.821937
Target:  5'- -aCGACGCacuuuuuGCGCGCgacgUGUACGccAGCGa -3'
miRNA:   3'- acGCUGCG-------CGUGCGa---ACAUGC--UCGCa -5'
22866 5' -56.1 NC_005137.2 + 15259 0.72 0.544982
Target:  5'- cGCGGCGCGCACGU---UGCGuugcaccuuGGCGUc -3'
miRNA:   3'- aCGCUGCGCGUGCGaacAUGC---------UCGCA- -5'
22866 5' -56.1 NC_005137.2 + 1196 0.67 0.831333
Target:  5'- gGUGAagGCGCuguaaACGCUUGaGCGGGUGg -3'
miRNA:   3'- aCGCUg-CGCG-----UGCGAACaUGCUCGCa -5'
22866 5' -56.1 NC_005137.2 + 1229 0.67 0.831333
Target:  5'- gGUGAagGCGCuacaaACGCUUGaGCGGGUGg -3'
miRNA:   3'- aCGCUg-CGCG-----UGCGAACaUGCUCGCa -5'
22866 5' -56.1 NC_005137.2 + 85896 0.77 0.308241
Target:  5'- gUGCGACGCGuCGCGCgcccGCGAGUGg -3'
miRNA:   3'- -ACGCUGCGC-GUGCGaacaUGCUCGCa -5'
22866 5' -56.1 NC_005137.2 + 11306 0.67 0.80521
Target:  5'- cGgGAUGCGUACGUgcuaagcugUGUGCGcGCGc -3'
miRNA:   3'- aCgCUGCGCGUGCGa--------ACAUGCuCGCa -5'
22866 5' -56.1 NC_005137.2 + 26669 0.69 0.739079
Target:  5'- -aCGACGaCGCACGCacGUGCGAaCGUu -3'
miRNA:   3'- acGCUGC-GCGUGCGaaCAUGCUcGCA- -5'
22866 5' -56.1 NC_005137.2 + 116850 0.69 0.739079
Target:  5'- --gGACGCGUACGUggaUugGAGCGg -3'
miRNA:   3'- acgCUGCGCGUGCGaacAugCUCGCa -5'
22866 5' -56.1 NC_005137.2 + 23 0.69 0.738093
Target:  5'- aGCGGCGCGUcagGCGCaaacuccuucacuUUGaacACGAGCGa -3'
miRNA:   3'- aCGCUGCGCG---UGCG-------------AACa--UGCUCGCa -5'
22866 5' -56.1 NC_005137.2 + 56497 0.66 0.885485
Target:  5'- cGCGuCGUGU-CGCgUGUACG-GCGUu -3'
miRNA:   3'- aCGCuGCGCGuGCGaACAUGCuCGCA- -5'
22866 5' -56.1 NC_005137.2 + 46097 0.73 0.505222
Target:  5'- cGCGACGUGCaacACGC----ACGAGCGUg -3'
miRNA:   3'- aCGCUGCGCG---UGCGaacaUGCUCGCA- -5'
22866 5' -56.1 NC_005137.2 + 42671 0.66 0.855792
Target:  5'- cGCGACGCcaaGCGCGCaaucgACGGGUa- -3'
miRNA:   3'- aCGCUGCG---CGUGCGaaca-UGCUCGca -5'
22866 5' -56.1 NC_005137.2 + 31252 0.66 0.86354
Target:  5'- cGCGuCGUGCGCGCUcaacuCGGGCc- -3'
miRNA:   3'- aCGCuGCGCGUGCGAacau-GCUCGca -5'
22866 5' -56.1 NC_005137.2 + 115264 0.66 0.878392
Target:  5'- gGCGACGCugGCGcCGCgaccuugGCGAGCa- -3'
miRNA:   3'- aCGCUGCG--CGU-GCGaaca---UGCUCGca -5'
22866 5' -56.1 NC_005137.2 + 72804 0.66 0.885485
Target:  5'- gGCGGCGCGCGCuGCcgucuugaUGUuuagcauguaaAUGAGCGc -3'
miRNA:   3'- aCGCUGCGCGUG-CGa-------ACA-----------UGCUCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.