miRNA display CGI


Results 1 - 20 of 63 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22870 3' -49.5 NC_005137.2 + 128554 0.68 0.975189
Target:  5'- -cGCGAUAgAGUggUCGucgggcgcGGGCACGUCg -3'
miRNA:   3'- uuUGCUGUgUCGuuGGU--------UUCGUGCAG- -5'
22870 3' -49.5 NC_005137.2 + 128348 0.69 0.958528
Target:  5'- uGAUGACACGGCcgauuuacagcaGACCAc-GUGCGUCa -3'
miRNA:   3'- uUUGCUGUGUCG------------UUGGUuuCGUGCAG- -5'
22870 3' -49.5 NC_005137.2 + 125055 0.66 0.992085
Target:  5'- cGGGCGGCGCGGC-GCCGGaucugaacGGCGCa-- -3'
miRNA:   3'- -UUUGCUGUGUCGuUGGUU--------UCGUGcag -5'
22870 3' -49.5 NC_005137.2 + 123069 0.67 0.982467
Target:  5'- -cGCGGCGC-GCAGCCuugguGAGguCGUUg -3'
miRNA:   3'- uuUGCUGUGuCGUUGGu----UUCguGCAG- -5'
22870 3' -49.5 NC_005137.2 + 122724 0.7 0.935456
Target:  5'- -cGCGuGCugGGCGugCuuAGCACGUUa -3'
miRNA:   3'- uuUGC-UGugUCGUugGuuUCGUGCAG- -5'
22870 3' -49.5 NC_005137.2 + 121508 0.66 0.993167
Target:  5'- cAAGCGGCgGCAGCcccGCCGuuGAGCACa-- -3'
miRNA:   3'- -UUUGCUG-UGUCGu--UGGU--UUCGUGcag -5'
22870 3' -49.5 NC_005137.2 + 119573 0.68 0.980247
Target:  5'- aGAGCGACGCAcGCu----GAGCACGUg -3'
miRNA:   3'- -UUUGCUGUGU-CGuugguUUCGUGCAg -5'
22870 3' -49.5 NC_005137.2 + 115136 0.71 0.905538
Target:  5'- cGGGCGGCAC-GUGACCGGcGGCACuGUCg -3'
miRNA:   3'- -UUUGCUGUGuCGUUGGUU-UCGUG-CAG- -5'
22870 3' -49.5 NC_005137.2 + 113692 0.67 0.984494
Target:  5'- -uGCGACGC-GCAcguCgCAcAGCGCGUCa -3'
miRNA:   3'- uuUGCUGUGuCGUu--G-GUuUCGUGCAG- -5'
22870 3' -49.5 NC_005137.2 + 110443 0.69 0.96592
Target:  5'- uGAGCGuGCACAccGCGGCC--GGCGCGUa -3'
miRNA:   3'- -UUUGC-UGUGU--CGUUGGuuUCGUGCAg -5'
22870 3' -49.5 NC_005137.2 + 109774 0.66 0.992085
Target:  5'- ---gGugACAGCGGCCc--GCAgCGUCg -3'
miRNA:   3'- uuugCugUGUCGUUGGuuuCGU-GCAG- -5'
22870 3' -49.5 NC_005137.2 + 108546 0.69 0.950105
Target:  5'- uGAGCG-CGguGCAGCCGAcggagcGCACGUUg -3'
miRNA:   3'- -UUUGCuGUguCGUUGGUUu-----CGUGCAG- -5'
22870 3' -49.5 NC_005137.2 + 103978 0.67 0.989516
Target:  5'- -cGCG-UGCAGCAGCuCAAgguucaugcgcAGCAUGUCg -3'
miRNA:   3'- uuUGCuGUGUCGUUG-GUU-----------UCGUGCAG- -5'
22870 3' -49.5 NC_005137.2 + 100135 0.73 0.8075
Target:  5'- gAAGCGGCACAGCucgcCCAcguacGGGCGCGcCg -3'
miRNA:   3'- -UUUGCUGUGUCGuu--GGU-----UUCGUGCaG- -5'
22870 3' -49.5 NC_005137.2 + 99891 0.67 0.984494
Target:  5'- --cCGACGCaucGGUAACCAAAGCAgCuUCg -3'
miRNA:   3'- uuuGCUGUG---UCGUUGGUUUCGU-GcAG- -5'
22870 3' -49.5 NC_005137.2 + 99763 0.67 0.986337
Target:  5'- uGAGCGcGCACGacGCGGCCAuguucAAGCugGUg -3'
miRNA:   3'- -UUUGC-UGUGU--CGUUGGU-----UUCGugCAg -5'
22870 3' -49.5 NC_005137.2 + 98500 0.72 0.884323
Target:  5'- --cCGACGCAG-AACCGAGGCGCa-- -3'
miRNA:   3'- uuuGCUGUGUCgUUGGUUUCGUGcag -5'
22870 3' -49.5 NC_005137.2 + 98070 1.07 0.011399
Target:  5'- cAAACGACACAGCAACCAAAGCACGUCc -3'
miRNA:   3'- -UUUGCUGUGUCGUUGGUUUCGUGCAG- -5'
22870 3' -49.5 NC_005137.2 + 97984 0.68 0.969245
Target:  5'- aAAACGggcGCGCGGCGugggugcgcccGCCAAGuggccagcguGCACGUCg -3'
miRNA:   3'- -UUUGC---UGUGUCGU-----------UGGUUU----------CGUGCAG- -5'
22870 3' -49.5 NC_005137.2 + 97906 0.66 0.994976
Target:  5'- -uGCGACAcCAGC-ACCAccuugucguuGGGCGUGUCa -3'
miRNA:   3'- uuUGCUGU-GUCGuUGGU----------UUCGUGCAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.