miRNA display CGI


Results 21 - 40 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22871 3' -58 NC_005137.2 + 20283 0.7 0.503313
Target:  5'- cGCACaAGCGCucuGCGCgcacaccguugCGCaCGCGCGCAu -3'
miRNA:   3'- -CGUG-UCGUGu--UGCG-----------GCG-GCGCGUGUu -5'
22871 3' -58 NC_005137.2 + 20348 0.68 0.645732
Target:  5'- cGCACgcccgucacgGGCACAagccaaACGCCGUCG-GCGCGu -3'
miRNA:   3'- -CGUG----------UCGUGU------UGCGGCGGCgCGUGUu -5'
22871 3' -58 NC_005137.2 + 20843 0.66 0.756879
Target:  5'- aCAUuaGGCGCAACGuuGCagcgGUGCACGc -3'
miRNA:   3'- cGUG--UCGUGUUGCggCGg---CGCGUGUu -5'
22871 3' -58 NC_005137.2 + 20970 0.66 0.756879
Target:  5'- -uGCGGCGC-GCGUuuUGCCGCGCuuGCAc -3'
miRNA:   3'- cgUGUCGUGuUGCG--GCGGCGCG--UGUu -5'
22871 3' -58 NC_005137.2 + 22419 0.71 0.446268
Target:  5'- cGCACcacguaaaAGCACAcgggcGCGCCGCCGaucaCGUACAu -3'
miRNA:   3'- -CGUG--------UCGUGU-----UGCGGCGGC----GCGUGUu -5'
22871 3' -58 NC_005137.2 + 22851 0.74 0.336336
Target:  5'- gGCGCGcGCAuacCGACGCCGCCGcCGCcCGAc -3'
miRNA:   3'- -CGUGU-CGU---GUUGCGGCGGC-GCGuGUU- -5'
22871 3' -58 NC_005137.2 + 25286 0.67 0.686933
Target:  5'- aCACAGUGCGggauccauACGCUGUCGCuGUACAu -3'
miRNA:   3'- cGUGUCGUGU--------UGCGGCGGCG-CGUGUu -5'
22871 3' -58 NC_005137.2 + 26299 0.71 0.483922
Target:  5'- cGUACGcGUACAACGgCGgCGCGCugGAc -3'
miRNA:   3'- -CGUGU-CGUGUUGCgGCgGCGCGugUU- -5'
22871 3' -58 NC_005137.2 + 27186 0.66 0.766497
Target:  5'- uGC-CGuGCAcCAAC-CCGCCGCcGCACAc -3'
miRNA:   3'- -CGuGU-CGU-GUUGcGGCGGCG-CGUGUu -5'
22871 3' -58 NC_005137.2 + 28088 0.68 0.656071
Target:  5'- aCGCAGCGCGGC-CUGCCGgGUgACAc -3'
miRNA:   3'- cGUGUCGUGUUGcGGCGGCgCG-UGUu -5'
22871 3' -58 NC_005137.2 + 28179 0.67 0.686933
Target:  5'- cGCAauaaGGCgACAGCGUCGC-GUGUACAAa -3'
miRNA:   3'- -CGUg---UCG-UGUUGCGGCGgCGCGUGUU- -5'
22871 3' -58 NC_005137.2 + 30945 0.73 0.376198
Target:  5'- cCGCGGCACAaagcaugcugaACG-CGCCGCGCGCc- -3'
miRNA:   3'- cGUGUCGUGU-----------UGCgGCGGCGCGUGuu -5'
22871 3' -58 NC_005137.2 + 31017 0.68 0.614684
Target:  5'- -gGCGGUugGugcguGCGCUGCUGgCGCACGAa -3'
miRNA:   3'- cgUGUCGugU-----UGCGGCGGC-GCGUGUU- -5'
22871 3' -58 NC_005137.2 + 31206 0.66 0.747149
Target:  5'- cGUACAcGCGCGGCGaCC-UCGUGUACAGa -3'
miRNA:   3'- -CGUGU-CGUGUUGC-GGcGGCGCGUGUU- -5'
22871 3' -58 NC_005137.2 + 31230 0.68 0.656071
Target:  5'- gGCACaccAGCuugaACAugGCCGCguCGUGCGCGc -3'
miRNA:   3'- -CGUG---UCG----UGUugCGGCG--GCGCGUGUu -5'
22871 3' -58 NC_005137.2 + 31670 0.71 0.483922
Target:  5'- uGCAUAGCggACGACaCCGCCGCGUg--- -3'
miRNA:   3'- -CGUGUCG--UGUUGcGGCGGCGCGuguu -5'
22871 3' -58 NC_005137.2 + 31804 0.68 0.625031
Target:  5'- gGCGCAGCgauGCGGCgGCCcaauGCCGCGuUACAc -3'
miRNA:   3'- -CGUGUCG---UGUUG-CGG----CGGCGC-GUGUu -5'
22871 3' -58 NC_005137.2 + 32634 0.66 0.775992
Target:  5'- aGCcCGuCGCGACGgCGCCaaaccgGCGCACAAg -3'
miRNA:   3'- -CGuGUcGUGUUGCgGCGG------CGCGUGUU- -5'
22871 3' -58 NC_005137.2 + 34587 0.73 0.384543
Target:  5'- aCGCGGCGgGcGCGUCGCCGCGCGgGu -3'
miRNA:   3'- cGUGUCGUgU-UGCGGCGGCGCGUgUu -5'
22871 3' -58 NC_005137.2 + 34863 0.67 0.717376
Target:  5'- cGCACGGCggGCAACGCga-UGCGCAUGGg -3'
miRNA:   3'- -CGUGUCG--UGUUGCGgcgGCGCGUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.