miRNA display CGI


Results 1 - 20 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22871 3' -58 NC_005137.2 + 126 0.67 0.69714
Target:  5'- -uGCGGCGCGu--CCGCgGCGUACAAu -3'
miRNA:   3'- cgUGUCGUGUugcGGCGgCGCGUGUU- -5'
22871 3' -58 NC_005137.2 + 1505 0.68 0.645732
Target:  5'- cCGCcGCGCGGCGCCGaCGCGUuguuCAAu -3'
miRNA:   3'- cGUGuCGUGUUGCGGCgGCGCGu---GUU- -5'
22871 3' -58 NC_005137.2 + 2002 0.72 0.410304
Target:  5'- uGCACAGCuCGugcACGCUGCgGCGCAgAc -3'
miRNA:   3'- -CGUGUCGuGU---UGCGGCGgCGCGUgUu -5'
22871 3' -58 NC_005137.2 + 5893 0.66 0.775992
Target:  5'- -aGCGGCGCGGC-CCGCCGC-UugAGu -3'
miRNA:   3'- cgUGUCGUGUUGcGGCGGCGcGugUU- -5'
22871 3' -58 NC_005137.2 + 6036 0.77 0.208261
Target:  5'- aCGCAGCGCAGCGCCccaucaccggcGCCGCGUucaucGCAAc -3'
miRNA:   3'- cGUGUCGUGUUGCGG-----------CGGCGCG-----UGUU- -5'
22871 3' -58 NC_005137.2 + 6988 0.69 0.573508
Target:  5'- cGCACAcGgACgAGCgGUCGCCGgGCACAAc -3'
miRNA:   3'- -CGUGU-CgUG-UUG-CGGCGGCgCGUGUU- -5'
22871 3' -58 NC_005137.2 + 7154 0.67 0.727388
Target:  5'- ----uGCGCGGCGUguaaGCCGCGCGCu- -3'
miRNA:   3'- cguguCGUGUUGCGg---CGGCGCGUGuu -5'
22871 3' -58 NC_005137.2 + 9225 0.7 0.513135
Target:  5'- --gUAGCGCAACaaguGCCGCCG-GCACAc -3'
miRNA:   3'- cguGUCGUGUUG----CGGCGGCgCGUGUu -5'
22871 3' -58 NC_005137.2 + 9501 0.67 0.727388
Target:  5'- -aACGGCGgGGCuGCCGCCGCuuguCACGu -3'
miRNA:   3'- cgUGUCGUgUUG-CGGCGGCGc---GUGUu -5'
22871 3' -58 NC_005137.2 + 9602 0.67 0.68591
Target:  5'- aGC-CAGCauGCAGCGUCGCuugcaagCGUGCACGc -3'
miRNA:   3'- -CGuGUCG--UGUUGCGGCG-------GCGCGUGUu -5'
22871 3' -58 NC_005137.2 + 9745 0.67 0.686933
Target:  5'- uGCACcuGCACuuguUGCCGCauguugagauugUGCGCACAAg -3'
miRNA:   3'- -CGUGu-CGUGuu--GCGGCG------------GCGCGUGUU- -5'
22871 3' -58 NC_005137.2 + 11266 0.67 0.707291
Target:  5'- -aGCGGCGCuGACGuCCGCuaCGCGCugAc -3'
miRNA:   3'- cgUGUCGUG-UUGC-GGCG--GCGCGugUu -5'
22871 3' -58 NC_005137.2 + 11579 0.71 0.474361
Target:  5'- -aACAauuUGCAACGCUGCCGUGCGCAc -3'
miRNA:   3'- cgUGUc--GUGUUGCGGCGGCGCGUGUu -5'
22871 3' -58 NC_005137.2 + 14132 0.68 0.656071
Target:  5'- uCGCGGgGCAGCGCacaUGCGCACAc -3'
miRNA:   3'- cGUGUCgUGUUGCGgcgGCGCGUGUu -5'
22871 3' -58 NC_005137.2 + 14880 0.66 0.775992
Target:  5'- uGUAgGGUGCgaGugGCCGCCuguauuuuguccGCGCACAc -3'
miRNA:   3'- -CGUgUCGUG--UugCGGCGG------------CGCGUGUu -5'
22871 3' -58 NC_005137.2 + 15245 0.74 0.321277
Target:  5'- aGCAgGGaa-AACGCCGCgGCGCGCAc -3'
miRNA:   3'- -CGUgUCgugUUGCGGCGgCGCGUGUu -5'
22871 3' -58 NC_005137.2 + 17300 0.67 0.686933
Target:  5'- uGCGCAGgACAuugacGCGCUGUgcgaCGUGCGCGu -3'
miRNA:   3'- -CGUGUCgUGU-----UGCGGCG----GCGCGUGUu -5'
22871 3' -58 NC_005137.2 + 18544 0.69 0.583756
Target:  5'- aCACGGCGCcGucgcccauccUGCCGCCGCGUcCAAc -3'
miRNA:   3'- cGUGUCGUGuU----------GCGGCGGCGCGuGUU- -5'
22871 3' -58 NC_005137.2 + 18596 0.74 0.306728
Target:  5'- cGUACuuGCACAAUgGCgCGCCGUGCGCGAu -3'
miRNA:   3'- -CGUGu-CGUGUUG-CG-GCGGCGCGUGUU- -5'
22871 3' -58 NC_005137.2 + 18767 0.73 0.379521
Target:  5'- aGCAC-GCGgAACGCCGCguucaaucaucacugCGCGCACGu -3'
miRNA:   3'- -CGUGuCGUgUUGCGGCG---------------GCGCGUGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.